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The map label for this gene is yjcD [H]

Identifier: 113969398

GI number: 113969398

Start: 1233041

End: 1234393

Strand: Direct

Name: yjcD [H]

Synonym: Shewmr4_1054

Alternate gene names: 113969398

Gene position: 1233041-1234393 (Clockwise)

Preceding gene: 113969393

Following gene: 113969403

Centisome position: 26.2

GC content: 53.44

Gene sequence:

>1353_bases
ATGTCTGAGCAATTGAGTTCAACAGCCGTACCCTCTGGTTCGTTTCTGGACCGTTATTTTTCAATTCAACAACGTGGTAG
CACAGTTCGCCAAGAAGTGATCGCAGGGTTAACCACCTTCCTCGCTATGGTGTACTCAGTGATTGTGGTACCCAATATGT
TAGGCAAAGCGGGATTCGATCCCGGCGCCGTGTTCGTCGCCACCTGTTTAATTGCCTCCTTTGGCTCGCTGCTGATGGGA
CTCTGGGCAAATCTCCCCATGGCCATTGGTTGTGCGATTTCACTCACCGCCTTTACCGCCTTCGGCTTGGTGTTAGGTCA
GGGCATGAGTATCCCTGTGACCTTGGGCGCTATCTTTTGGATGGGCGTGATTTTTACCGTCGTGAGTGTCACGGGCGTGC
GTCAATGGGTGCTGGCTAACCTACCGAAGGGGATTGCCCATGGTACAGGTATAGGTATTGGCTTGTTTTTACTCTTAATT
GCCACTAACAGTGTGCAGTTGATTGTGGCCAACGACGCGGGTCTGCCAGTGAAGTTAGGCGACATTAACAGCCTGCCCGT
TATCGCCACCGTACTGGGGTTAGCGGCCACTATCGGTTTAGAGCGTCGCGGCGTACCCGGCGGGATTTTACTGGTGATTA
TTGGCCTATCCCTGTTTGGTTTAGTGTTTGATCCAAGCGTGACATTCCAAGGTTTCTTCGCCGTGCCTGATTTTACCTCT
GAGCACTCGCTGATTGGCCAAATGGATATTATGGGCGCCTTGAATCCTGTGGTATTACCGATTGTGCTGGCGCTGGTGAT
GACGGCGATTTTTGATGCCACGGGCACCATCCGCGCGGTGGCAGGGCAAGCCAATCTGCTGGATAAAGACGATAATATCG
TCGGCGGTGGCAAGGCGCTGACCTCGGATTCGGTCAGCAGCATGTTTGCGGGGATCGTTGGTGGCGCCCCTGCGGCCGTG
TATATCGAATCGGCGGCGGGTACGGCGGCGGGCGGTAAGACAGGTTTAACCGCGACCATAGTGGGCGGATTATTCCTGCT
GATGGTGTTTTTAGCGCCGCTCAGCTATTTAGTGCCAGCCTATGCTACGGCGCCTGCGCTGATGTATGTGGGGCTATTGA
TGCTCAGCAATGTGACTAAGTTGGACTTTAACGACAAGGTCGATGCGATGGCGGGATTAACCTGCGCCGTATTCATCATC
CTCAGCTGTAACATTGTGACCGGTATTATGCTCGGCTTTGTGACCTTAGTGGTTGGCCGCATTTTTAGCGGTGAAATCCG
TCAGCTTAAGTTAGGCGTGCTCGCTATTACGCTGGGCCTTGTGGCCTTCTATATGGGCGGCTGGGCAATCTAG

Upstream 100 bases:

>100_bases
TCATTGGATTTGGGGCTCTAATCTGCCGCAGCCAGCGTCGCCAATGGTTAAGCCAATTGGTATCGACCCTATTTTAAGAG
ATCACAAGGTATAACAAGAT

Downstream 100 bases:

>100_bases
TTTGCTACTCTCTCTATAAAGTTGAAAGCGAGTGCCGTTAGCACTCGCTTTCATTGACCTCATTGTGTTCACAATAGGCT
CGCAGTAAATCCTTCCAAGT

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 449

Protein sequence:

>450_residues
MSEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKAGFDPGAVFVATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAV
YIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI

Sequences:

>Translated_450_residues
MSEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKAGFDPGAVFVATCLIASFGSLLMG
LWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLI
ATNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAV
YIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFII
LSCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI
>Mature_449_residues
SEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKAGFDPGAVFVATCLIASFGSLLMGL
WANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFWMGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLIA
TNSVQLIVANDAGLPVKLGDINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTSE
HSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKALTSDSVSSMFAGIVGGAPAAVY
IESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIIL
SCNIVTGIMLGFVTLVVGRIFSGEIRQLKLGVLAITLGLVAFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=72.1603563474387, Blast_Score=629, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=450, Percent_Identity=73.7777777777778, Blast_Score=624, Evalue=1e-180,
Organism=Escherichia coli, GI87082309, Length=421, Percent_Identity=39.4299287410926, Blast_Score=273, Evalue=1e-74,
Organism=Escherichia coli, GI1790150, Length=438, Percent_Identity=38.3561643835616, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46307; Mature: 46176

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SEQLSSTAVPSGSFLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGKAGFD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PGAVFVATCLIASFGSLLMGLWANLPMAIGCAISLTAFTAFGLVLGQGMSIPVTLGAIFW
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGVIFTVVSVTGVRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANDAGLPVKLG
HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCEEEEC
DINSLPVIATVLGLAATIGLERRGVPGGILLVIIGLSLFGLVFDPSVTFQGFFAVPDFTS
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
EHSLIGQMDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQANLLDKDDNIVGGGKAL
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCC
TSDSVSSMFAGIVGGAPAAVYIESAAGTAAGGKTGLTATIVGGLFLLMVFLAPLSYLVPA
CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFSGEIRQLKLGVLAITLGLVAFYMGGWAI
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]