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The map label for this gene is ompK [H]

Identifier: 113969380

GI number: 113969380

Start: 1209134

End: 1209973

Strand: Direct

Name: ompK [H]

Synonym: Shewmr4_1036

Alternate gene names: 113969380

Gene position: 1209134-1209973 (Clockwise)

Preceding gene: 113969379

Following gene: 113969381

Centisome position: 25.69

GC content: 45.6

Gene sequence:

>840_bases
ATGAAAAACGTTAAAACTTTAGCTTTAGCTGCTACAGCAGTAGCTGCAATCTCTGGTAACGCATTTGCTGCAGATCGTAC
AGACCTTCACGGTTCTGACTACAAGTGGATGCAGTTCAACGCTATGTACTCTATCGGCGAAAAGCCTGATAACCCAGCTT
CTGGCGACCAACACAACTACTTAGAAATGGAGTTCGGCGGCCGCTCTGGTATTTTCGATCTCTATGGTTATGTTGACGTA
TTCAACTTAGCAAACGAGAGCAGCAAAGACGGTGACAAGAACCCAGGTTCAGGCACCAGCAAACTGTTCATGAAATTTGC
TCCACGTGTTTCTATCGATGCATTAACGGGCAAAGATTTATCTTTCGGTCCAATCCAAGAAGTTTACTTCTCTACTCTGT
TCAACTGGGACGGTCTGAACGGTGAAGGCGTTAACTCTACTTTCTGGGGTGTTGGTGCTGACGTAAACGTGCCTTGGTTA
GGCAAAACAGGTATGAACCTGTACGGTTACTACGACATGAACGCGAAAGAGTGGAACGGTTACCAATTCTCTGCTAACTG
GTTCAAGCCTTTCTACTTCTTCGACAACAAGAGCTTCCTGTCATTCCAAGGTTATATCGATTACCAATTCGGTGCTGACG
AAGACAAGACTGCTTTCGTACCAAAAACCTCTAACGGTGGTAACATCTTCTTCGGTCTATACTGGCACTCAGATCGTTAC
GCTCTGGGCTATGGCCTGAAAGGCTTCAAAGACGTTTACCTGTTAGAAGACGGTGCTGGTGCACTAGCTCTAGAATCAAC
AGGTTGGTCTCACTACCTGTCAGCTACTTACAAGTTCTAA

Upstream 100 bases:

>100_bases
TACACTAGATTATTGAGATTTTTTTTAATCGAGGTAGAATGCGAGCGCCACAAAAAGAACGCTACCCTAGATGGTAGCAA
ACAAAATAATGGGGTTGATG

Downstream 100 bases:

>100_bases
TTTCTTGTAAGAGCCGTTGGAGCCGCGATGGCGGCTCCATCTTTTATGTGTCATGAATCTTTATCTAAACCCATTTATAA
TTTGAGCAGTGCGTTTATAT

Product: nucleoside-specific channel-forming protein, Tsx

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF

Sequences:

>Translated_279_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
>Mature_279_residues
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNYLEMEFGGRSGIFDLYGYVDV
FNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDLSFGPIQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWL
GKTGMNLYGYYDMNAKEWNGYQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF

Specific function: Serves as receptor for a broad-host-range vibriophage, KVP40 [H]

COG id: COG3248

COG function: function code M; Nucleoside-binding outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli tsx [H]

Homologues:

Organism=Escherichia coli, GI1786612, Length=242, Percent_Identity=34.7107438016529, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003055
- InterPro:   IPR018013 [H]

Pfam domain/function: PF03502 Channel_Tsx [H]

EC number: NA

Molecular weight: Translated: 31063; Mature: 31063

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNY
CCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDVFNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEECCCEEEEEECCCCC
SFGPIQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
EEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCE
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
EEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECC
>Mature Secondary Structure
MKNVKTLALAATAVAAISGNAFAADRTDLHGSDYKWMQFNAMYSIGEKPDNPASGDQHNY
CCCCHHHHHHHHHHEEECCCEEECCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCE
LEMEFGGRSGIFDLYGYVDVFNLANESSKDGDKNPGSGTSKLFMKFAPRVSIDALTGKDL
EEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHEEECCCEEEEEECCCCC
SFGPIQEVYFSTLFNWDGLNGEGVNSTFWGVGADVNVPWLGKTGMNLYGYYDMNAKEWNG
CCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCC
YQFSANWFKPFYFFDNKSFLSFQGYIDYQFGADEDKTAFVPKTSNGGNIFFGLYWHSDRY
EEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCCE
ALGYGLKGFKDVYLLEDGAGALALESTGWSHYLSATYKF
EEECCCCCCEEEEEEECCCCEEEEECCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]