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The map label for this gene is ppdD [C]

Identifier: 113969196

GI number: 113969196

Start: 1006485

End: 1006880

Strand: Direct

Name: ppdD [C]

Synonym: Shewmr4_0852

Alternate gene names: 113969196

Gene position: 1006485-1006880 (Clockwise)

Preceding gene: 113969195

Following gene: 113969197

Centisome position: 21.39

GC content: 45.96

Gene sequence:

>396_bases
ATGAAACTCAGTAAAATCAAAGTTAATACTGGATTTACGCTAATTGAATTGATGATAGCTATTGCCATAGTCGGCATACT
GGCCAGTATTGCATTACCGTCATATCAGGAGCATGTACGCAACACCCGTAGGACTGATGCCCGTGATGCACTAAGCAATG
CCGCTCAGATTATGGAGCGCCAATACACATCAACCAATACCTATACTGGTGGCACTATAGTCAAAGATGTCGCATTTTCC
TCGCCAAGTGGTTATTACAGTGTGACGGCCACCGAACTGACAACGGGCACCTATACCTTAGTCTCAACGGCTAATGCCCC
CCAGGATAAAGACGTTGCCTGTAAAACCATGAGCATCAACCATACAGGTACGAAGACGCCAGCTGCATGTTGGTAA

Upstream 100 bases:

>100_bases
CTTAAGCAGGCTTGGCCATTATCTATACAGATTTCAAATTGTGCTGCTAGAATGGTGTTAGTTTTTTGACGCCGACTAAA
ATGACTAAGAATCACCACAT

Downstream 100 bases:

>100_bases
CCATACAAGGAAGTGGGCATATAGATGAGCACTAAGAAAATCCTAGGGTTTACCTTAACCGAGCTCATGGTTGTAGTGGC
CATAGTGGCCATCATAGCAG

Product: methylation site containing protein

Products: NA

Alternate protein names: Fimbrial Protein Pilin; General Secretion Pathway Protein H; Type 4 Fimbrial Biogenesis Protein PilE; Type IV Pilin; Type IV Pilus Biogenesis Protein PilE; Type IV Pilin PilE; Pilus Assembly Protein; Prepilin Like Protein; Tfp Pilus Assembly Protein PilE; Type IV Pilus Assembly Protein PilE; Prepilin-Type Cleavage/Methylation; Type IV Pilin Pile Protein; Methylation

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKLSKIKVNTGFTLIELMIAIAIVGILASIALPSYQEHVRNTRRTDARDALSNAAQIMERQYTSTNTYTGGTIVKDVAFS
SPSGYYSVTATELTTGTYTLVSTANAPQDKDVACKTMSINHTGTKTPAACW

Sequences:

>Translated_131_residues
MKLSKIKVNTGFTLIELMIAIAIVGILASIALPSYQEHVRNTRRTDARDALSNAAQIMERQYTSTNTYTGGTIVKDVAFS
SPSGYYSVTATELTTGTYTLVSTANAPQDKDVACKTMSINHTGTKTPAACW
>Mature_131_residues
MKLSKIKVNTGFTLIELMIAIAIVGILASIALPSYQEHVRNTRRTDARDALSNAAQIMERQYTSTNTYTGGTIVKDVAFS
SPSGYYSVTATELTTGTYTLVSTANAPQDKDVACKTMSINHTGTKTPAACW

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14114; Mature: 14114

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSKIKVNTGFTLIELMIAIAIVGILASIALPSYQEHVRNTRRTDARDALSNAAQIMER
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
QYTSTNTYTGGTIVKDVAFSSPSGYYSVTATELTTGTYTLVSTANAPQDKDVACKTMSIN
HHCCCCCCCCCHHEEHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEC
HTGTKTPAACW
CCCCCCCCCCC
>Mature Secondary Structure
MKLSKIKVNTGFTLIELMIAIAIVGILASIALPSYQEHVRNTRRTDARDALSNAAQIMER
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
QYTSTNTYTGGTIVKDVAFSSPSGYYSVTATELTTGTYTLVSTANAPQDKDVACKTMSIN
HHCCCCCCCCCHHEEHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCEEEEEEEC
HTGTKTPAACW
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA