| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is dbpA [H]
Identifier: 113969089
GI number: 113969089
Start: 866983
End: 868359
Strand: Direct
Name: dbpA [H]
Synonym: Shewmr4_0745
Alternate gene names: 113969089
Gene position: 866983-868359 (Clockwise)
Preceding gene: 113969088
Following gene: 113969092
Centisome position: 18.42
GC content: 53.45
Gene sequence:
>1377_bases ATGGCTTTCTCGACTCTTAAGCTAAAACCCGAACTGCTTGAGAACCTTACCACTATGGGCTATTACGAAATGACGCCGAT TCAGGCGCAGAGTCTGCCAGCCATTTTAGCGGGCGAGGATGTGATTGGTCAGGGCAAGACGGGTTCGGGTAAAACGGCGG CCTTCGGTTTAGGCTTGTTGAACAAGTTAGATGTGAAGCGTTTTCGCATTCAAACCTTAGTGCTGTGTCCAACCCGCGAA CTGGCTGACCAAGTAGCGCAGGAGATCCGCACACTGGCGCGTGGTATTCACAACGTAAAAGTGCTTACCCTCTGTGGCGG CGTGCCCATGGGGCCGCAAATCGGTTCGCTCGAGCATGGCGCCCACATTATCGTTGGTACGCCGGGGCGGATTGTCGATC ACTTAGAGCGTAACCGTTTAGACCTAAGCAACCTGAATATGCTCGTGCTTGACGAAGCCGACCGTATGCTGGAAATGGGC TTCCAACCCCAGCTCGATGCGATTATCGAGCAGTCGCCACGCGAGCGCCAAACCTTGCTGTTTAGCGCAACCTTCCCCGA GCAGATCCAGTCGATTGCCAAGCAAATTATGTACGACCCTGTGATGGTGAAAGTGGCCGTGACCCACGAAAAGAGCACCA TTGAGCAGCATTTCTACCACTTGGATGACGACAAGGCGCGCATGCAGGCGCTGCAATTATTGCTGCTGGATCGCAAGCCC GAGAGTGCGGTGGTGTTTTGTAATACCAAGCGCGAAACCCAAAAAGTGGCCGATGAACTCAGCGATGCAGGCTTTAGCGT TATCGCCCTGCACGGCGACTTAGAGCAGCGTGACCGGGATGAAACCCTGCTGCAATTTGCCAACAAGAGCGCCTGTGTGT TGGTCGCAACCGATGTGGCTGCCCGTGGCCTCGATATCGACGCACTGGACGCGGTATTTAACTACCATGTGGCCTATGAT ACCGAAGTGCATATTCACCGTATTGGCCGTACCGGCCGTGCGGGCAGTAAGGGCGCGGCTTTTACCTTCTTTAACGATCA AGATGGCTACAAAATTGCGTTATTAGAAGAGTACTTAGAGCGCGATATTCAGAGCGAAGCCTTACCATCATTAAGTTTGC TGGGCACTGCGCCCAATGCGCCAACCATGATCACCCTGCAAATCGATGGCGGTAAAAAAGAGAAACTCCGCCCCGGTGAT ATCCTCGGCGCCCTCACTGGTGAGAATGGTATCGAAGGCTCGCAGGTCGGCAAAATCCTTGTGACCGATTACCGCGCCTA TGTGGCGGTGAATCGTAAAGTCGCTAAAAAGGCACTGAGTAAGATCACCAGCGGCCGCATTAAAGGCAAGTCCTACCGCG CGTGGTTAATGAAATAA
Upstream 100 bases:
>100_bases AGTAACACTATGCAATTTCAGTGACTTGCCTGAGTTTAAGCCAGCGCGGGTTACCCACCACAGGATATTCGCCTTGAGCA ATTCAGACACTCAGCCTTCA
Downstream 100 bases:
>100_bases GCCGCAGTTAAGTGATTAAAAAGCGAAGCCAAATGGCTTCGCTTTTTGTTTTACAGCATCTAGGTTGATAGTGCCTTGTT ATGTCCGGGTGCTTGACTGT
Product: ATP-dependent RNA helicase DbpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRE LADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMG FQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYD TEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGD ILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
Sequences:
>Translated_458_residues MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRE LADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMG FQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYD TEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGD ILGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK >Mature_457_residues AFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTREL ADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGF QPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPE SAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAARGLDIDALDAVFNYHVAYDT EVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLERDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDI LGALTGENGIEGSQVGKILVTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
Specific function: Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome ass
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI7661920, Length=366, Percent_Identity=35.792349726776, Blast_Score=247, Evalue=2e-65, Organism=Homo sapiens, GI45446747, Length=444, Percent_Identity=35.5855855855856, Blast_Score=245, Evalue=5e-65, Organism=Homo sapiens, GI45446743, Length=444, Percent_Identity=35.5855855855856, Blast_Score=245, Evalue=5e-65, Organism=Homo sapiens, GI20149629, Length=349, Percent_Identity=39.541547277937, Blast_Score=244, Evalue=1e-64, Organism=Homo sapiens, GI301171467, Length=371, Percent_Identity=38.2749326145553, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI87196351, Length=371, Percent_Identity=38.2749326145553, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI301171475, Length=371, Percent_Identity=38.2749326145553, Blast_Score=240, Evalue=2e-63, Organism=Homo sapiens, GI169881239, Length=370, Percent_Identity=38.1081081081081, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI13514809, Length=370, Percent_Identity=38.1081081081081, Blast_Score=238, Evalue=1e-62, Organism=Homo sapiens, GI148613856, Length=354, Percent_Identity=35.8757062146893, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI38201710, Length=354, Percent_Identity=35.8757062146893, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI4758138, Length=354, Percent_Identity=35.5932203389831, Blast_Score=233, Evalue=2e-61, Organism=Homo sapiens, GI41327773, Length=350, Percent_Identity=38.8571428571429, Blast_Score=231, Evalue=1e-60, Organism=Homo sapiens, GI50659095, Length=376, Percent_Identity=38.031914893617, Blast_Score=229, Evalue=3e-60, Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=32.0652173913043, Blast_Score=223, Evalue=3e-58, Organism=Homo sapiens, GI262118318, Length=360, Percent_Identity=36.6666666666667, Blast_Score=223, Evalue=3e-58, Organism=Homo sapiens, GI262231852, Length=361, Percent_Identity=36.5650969529086, Blast_Score=222, Evalue=5e-58, Organism=Homo sapiens, GI216548263, Length=361, Percent_Identity=36.5650969529086, Blast_Score=222, Evalue=6e-58, Organism=Homo sapiens, GI13518015, Length=361, Percent_Identity=36.5650969529086, Blast_Score=222, Evalue=6e-58, Organism=Homo sapiens, GI31542656, Length=372, Percent_Identity=36.0215053763441, Blast_Score=221, Evalue=1e-57, Organism=Homo sapiens, GI222352149, Length=365, Percent_Identity=36.7123287671233, Blast_Score=218, Evalue=1e-56, Organism=Homo sapiens, GI41327771, Length=425, Percent_Identity=33.1764705882353, Blast_Score=216, Evalue=5e-56, Organism=Homo sapiens, GI13129006, Length=373, Percent_Identity=36.9973190348526, Blast_Score=215, Evalue=8e-56, Organism=Homo sapiens, GI21071032, Length=357, Percent_Identity=36.4145658263305, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI4758112, Length=356, Percent_Identity=33.7078651685393, Blast_Score=205, Evalue=7e-53, Organism=Homo sapiens, GI18375623, Length=356, Percent_Identity=33.7078651685393, Blast_Score=205, Evalue=7e-53, Organism=Homo sapiens, GI188035877, Length=349, Percent_Identity=35.8166189111748, Blast_Score=204, Evalue=1e-52, Organism=Homo sapiens, GI224593278, Length=355, Percent_Identity=35.4929577464789, Blast_Score=204, Evalue=2e-52, Organism=Homo sapiens, GI21040371, Length=357, Percent_Identity=33.3333333333333, Blast_Score=203, Evalue=3e-52, Organism=Homo sapiens, GI83700235, Length=351, Percent_Identity=36.1823361823362, Blast_Score=201, Evalue=1e-51, Organism=Homo sapiens, GI41327776, Length=349, Percent_Identity=34.6704871060172, Blast_Score=199, Evalue=6e-51, Organism=Homo sapiens, GI4503529, Length=378, Percent_Identity=33.3333333333333, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI13514831, Length=357, Percent_Identity=35.8543417366947, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI55749865, Length=365, Percent_Identity=31.5068493150685, Blast_Score=189, Evalue=5e-48, Organism=Homo sapiens, GI164419743, Length=345, Percent_Identity=34.2028985507246, Blast_Score=188, Evalue=9e-48, Organism=Homo sapiens, GI51094101, Length=345, Percent_Identity=34.2028985507246, Blast_Score=188, Evalue=1e-47, Organism=Homo sapiens, GI8922886, Length=379, Percent_Identity=32.1899736147757, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI256223453, Length=415, Percent_Identity=29.1566265060241, Blast_Score=185, Evalue=8e-47, Organism=Homo sapiens, GI6005743, Length=379, Percent_Identity=32.1899736147757, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI41327779, Length=358, Percent_Identity=31.5642458100559, Blast_Score=178, Evalue=1e-44, Organism=Homo sapiens, GI38327634, Length=331, Percent_Identity=35.3474320241692, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI164419732, Length=341, Percent_Identity=33.1378299120235, Blast_Score=171, Evalue=9e-43, Organism=Homo sapiens, GI62241022, Length=362, Percent_Identity=31.767955801105, Blast_Score=169, Evalue=5e-42, Organism=Homo sapiens, GI38569503, Length=356, Percent_Identity=31.1797752808989, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI38569505, Length=356, Percent_Identity=31.1797752808989, Blast_Score=167, Evalue=2e-41, Organism=Homo sapiens, GI9506931, Length=399, Percent_Identity=29.0726817042606, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI62241024, Length=368, Percent_Identity=30.4347826086957, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI17505907, Length=427, Percent_Identity=28.3372365339578, Blast_Score=158, Evalue=9e-39, Organism=Homo sapiens, GI9966805, Length=322, Percent_Identity=32.6086956521739, Blast_Score=138, Evalue=1e-32, Organism=Homo sapiens, GI4826686, Length=331, Percent_Identity=28.3987915407855, Blast_Score=128, Evalue=1e-29, Organism=Homo sapiens, GI20336298, Length=215, Percent_Identity=34.8837209302326, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI256773275, Length=410, Percent_Identity=27.3170731707317, Blast_Score=119, Evalue=6e-27, Organism=Homo sapiens, GI154759257, Length=410, Percent_Identity=25.3658536585366, Blast_Score=105, Evalue=1e-22, Organism=Escherichia coli, GI1787605, Length=458, Percent_Identity=53.7117903930131, Blast_Score=482, Evalue=1e-137, Organism=Escherichia coli, GI87082221, Length=374, Percent_Identity=41.9786096256684, Blast_Score=280, Evalue=1e-76, Organism=Escherichia coli, GI1787016, Length=375, Percent_Identity=37.0666666666667, Blast_Score=254, Evalue=6e-69, Organism=Escherichia coli, GI1790214, Length=372, Percent_Identity=35.752688172043, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1788930, Length=370, Percent_Identity=35.6756756756757, Blast_Score=202, Evalue=5e-53, Organism=Escherichia coli, GI48994977, Length=410, Percent_Identity=23.1707317073171, Blast_Score=69, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71995724, Length=366, Percent_Identity=37.9781420765027, Blast_Score=257, Evalue=1e-68, Organism=Caenorhabditis elegans, GI17507121, Length=366, Percent_Identity=37.9781420765027, Blast_Score=256, Evalue=1e-68, Organism=Caenorhabditis elegans, GI71987143, Length=371, Percent_Identity=35.3099730458221, Blast_Score=254, Evalue=8e-68, Organism=Caenorhabditis elegans, GI17555296, Length=349, Percent_Identity=39.2550143266476, Blast_Score=238, Evalue=5e-63, Organism=Caenorhabditis elegans, GI17552642, Length=380, Percent_Identity=36.8421052631579, Blast_Score=234, Evalue=5e-62, Organism=Caenorhabditis elegans, GI71995718, Length=369, Percent_Identity=38.7533875338753, Blast_Score=229, Evalue=2e-60, Organism=Caenorhabditis elegans, GI17510307, Length=369, Percent_Identity=36.8563685636856, Blast_Score=228, Evalue=4e-60, Organism=Caenorhabditis elegans, GI17510309, Length=369, Percent_Identity=36.8563685636856, Blast_Score=228, Evalue=4e-60, Organism=Caenorhabditis elegans, GI115533224, Length=368, Percent_Identity=37.2282608695652, Blast_Score=228, Evalue=5e-60, Organism=Caenorhabditis elegans, GI71995514, Length=369, Percent_Identity=36.8563685636856, Blast_Score=228, Evalue=7e-60, Organism=Caenorhabditis elegans, GI86570094, Length=356, Percent_Identity=38.7640449438202, Blast_Score=225, Evalue=3e-59, Organism=Caenorhabditis elegans, GI32565321, Length=410, Percent_Identity=33.1707317073171, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI17552114, Length=362, Percent_Identity=30.939226519337, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI71999646, Length=370, Percent_Identity=35.1351351351351, Blast_Score=207, Evalue=7e-54, Organism=Caenorhabditis elegans, GI17507877, Length=371, Percent_Identity=36.3881401617251, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI71999644, Length=370, Percent_Identity=35.1351351351351, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17507879, Length=371, Percent_Identity=36.9272237196765, Blast_Score=205, Evalue=5e-53, Organism=Caenorhabditis elegans, GI115532548, Length=402, Percent_Identity=33.8308457711443, Blast_Score=205, Evalue=5e-53, Organism=Caenorhabditis elegans, GI115532546, Length=356, Percent_Identity=35.6741573033708, Blast_Score=204, Evalue=8e-53, Organism=Caenorhabditis elegans, GI17507945, Length=361, Percent_Identity=35.4570637119114, Blast_Score=204, Evalue=9e-53, Organism=Caenorhabditis elegans, GI71982858, Length=353, Percent_Identity=30.8781869688385, Blast_Score=195, Evalue=4e-50, Organism=Caenorhabditis elegans, GI17510559, Length=382, Percent_Identity=33.2460732984293, Blast_Score=193, Evalue=1e-49, Organism=Caenorhabditis elegans, GI17507881, Length=379, Percent_Identity=33.509234828496, Blast_Score=191, Evalue=5e-49, Organism=Caenorhabditis elegans, GI17509811, Length=368, Percent_Identity=32.8804347826087, Blast_Score=187, Evalue=1e-47, Organism=Caenorhabditis elegans, GI17505370, Length=347, Percent_Identity=33.7175792507205, Blast_Score=185, Evalue=5e-47, Organism=Caenorhabditis elegans, GI17553716, Length=367, Percent_Identity=29.700272479564, Blast_Score=182, Evalue=4e-46, Organism=Caenorhabditis elegans, GI17537549, Length=360, Percent_Identity=32.2222222222222, Blast_Score=181, Evalue=5e-46, Organism=Caenorhabditis elegans, GI17536099, Length=388, Percent_Identity=31.1855670103093, Blast_Score=179, Evalue=3e-45, Organism=Caenorhabditis elegans, GI17536101, Length=388, Percent_Identity=31.1855670103093, Blast_Score=178, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17536103, Length=388, Percent_Identity=31.1855670103093, Blast_Score=175, Evalue=4e-44, Organism=Caenorhabditis elegans, GI193206561, Length=351, Percent_Identity=29.6296296296296, Blast_Score=172, Evalue=4e-43, Organism=Caenorhabditis elegans, GI193208216, Length=406, Percent_Identity=30.5418719211823, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI17508543, Length=372, Percent_Identity=31.4516129032258, Blast_Score=159, Evalue=4e-39, Organism=Caenorhabditis elegans, GI71990816, Length=384, Percent_Identity=33.3333333333333, Blast_Score=141, Evalue=6e-34, Organism=Caenorhabditis elegans, GI17556951, Length=396, Percent_Identity=27.5252525252525, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17507641, Length=380, Percent_Identity=31.0526315789474, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI32564046, Length=367, Percent_Identity=30.5177111716621, Blast_Score=131, Evalue=6e-31, Organism=Caenorhabditis elegans, GI71982862, Length=200, Percent_Identity=31.5, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI25148291, Length=349, Percent_Identity=27.2206303724928, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI71997889, Length=395, Percent_Identity=27.5949367088608, Blast_Score=113, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25148203, Length=390, Percent_Identity=22.8205128205128, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71987152, Length=105, Percent_Identity=38.0952380952381, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI25148205, Length=316, Percent_Identity=22.7848101265823, Blast_Score=83, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6320224, Length=363, Percent_Identity=34.1597796143251, Blast_Score=242, Evalue=1e-64, Organism=Saccharomyces cerevisiae, GI6321856, Length=405, Percent_Identity=36.2962962962963, Blast_Score=240, Evalue=3e-64, Organism=Saccharomyces cerevisiae, GI6324217, Length=349, Percent_Identity=36.676217765043, Blast_Score=238, Evalue=1e-63, Organism=Saccharomyces cerevisiae, GI6325138, Length=380, Percent_Identity=37.6315789473684, Blast_Score=236, Evalue=4e-63, Organism=Saccharomyces cerevisiae, GI6321360, Length=336, Percent_Identity=40.1785714285714, Blast_Score=232, Evalue=1e-61, Organism=Saccharomyces cerevisiae, GI6324778, Length=377, Percent_Identity=37.1352785145889, Blast_Score=231, Evalue=2e-61, Organism=Saccharomyces cerevisiae, GI6320041, Length=369, Percent_Identity=32.2493224932249, Blast_Score=223, Evalue=4e-59, Organism=Saccharomyces cerevisiae, GI6323021, Length=351, Percent_Identity=35.8974358974359, Blast_Score=208, Evalue=1e-54, Organism=Saccharomyces cerevisiae, GI6322912, Length=371, Percent_Identity=33.9622641509434, Blast_Score=200, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6322323, Length=371, Percent_Identity=33.9622641509434, Blast_Score=200, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6323947, Length=346, Percent_Identity=36.4161849710983, Blast_Score=200, Evalue=3e-52, Organism=Saccharomyces cerevisiae, GI6320449, Length=376, Percent_Identity=32.4468085106383, Blast_Score=187, Evalue=3e-48, Organism=Saccharomyces cerevisiae, GI6321963, Length=375, Percent_Identity=33.6, Blast_Score=186, Evalue=9e-48, Organism=Saccharomyces cerevisiae, GI6320119, Length=356, Percent_Identity=29.2134831460674, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6324620, Length=380, Percent_Identity=31.0526315789474, Blast_Score=182, Evalue=7e-47, Organism=Saccharomyces cerevisiae, GI6322427, Length=365, Percent_Identity=34.7945205479452, Blast_Score=181, Evalue=2e-46, Organism=Saccharomyces cerevisiae, GI6319714, Length=358, Percent_Identity=29.8882681564246, Blast_Score=180, Evalue=3e-46, Organism=Saccharomyces cerevisiae, GI6321111, Length=370, Percent_Identity=31.0810810810811, Blast_Score=169, Evalue=9e-43, Organism=Saccharomyces cerevisiae, GI6319618, Length=414, Percent_Identity=29.4685990338164, Blast_Score=166, Evalue=8e-42, Organism=Saccharomyces cerevisiae, GI6321267, Length=366, Percent_Identity=32.2404371584699, Blast_Score=157, Evalue=3e-39, Organism=Saccharomyces cerevisiae, GI6320400, Length=476, Percent_Identity=27.9411764705882, Blast_Score=147, Evalue=3e-36, Organism=Saccharomyces cerevisiae, GI6320173, Length=207, Percent_Identity=39.6135265700483, Blast_Score=146, Evalue=6e-36, Organism=Saccharomyces cerevisiae, GI6323306, Length=409, Percent_Identity=23.2273838630807, Blast_Score=110, Evalue=5e-25, Organism=Saccharomyces cerevisiae, GI6324366, Length=423, Percent_Identity=24.113475177305, Blast_Score=105, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6322876, Length=182, Percent_Identity=32.967032967033, Blast_Score=87, Evalue=5e-18, Organism=Drosophila melanogaster, GI24662330, Length=354, Percent_Identity=39.8305084745763, Blast_Score=251, Evalue=8e-67, Organism=Drosophila melanogaster, GI24645031, Length=365, Percent_Identity=36.986301369863, Blast_Score=250, Evalue=1e-66, Organism=Drosophila melanogaster, GI24642151, Length=344, Percent_Identity=40.406976744186, Blast_Score=247, Evalue=1e-65, Organism=Drosophila melanogaster, GI21355075, Length=363, Percent_Identity=36.3636363636364, Blast_Score=235, Evalue=4e-62, Organism=Drosophila melanogaster, GI28574962, Length=366, Percent_Identity=35.5191256830601, Blast_Score=231, Evalue=8e-61, Organism=Drosophila melanogaster, GI24585582, Length=351, Percent_Identity=38.7464387464387, Blast_Score=229, Evalue=3e-60, Organism=Drosophila melanogaster, GI24584399, Length=360, Percent_Identity=36.9444444444444, Blast_Score=228, Evalue=5e-60, Organism=Drosophila melanogaster, GI24644487, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=6e-60, Organism=Drosophila melanogaster, GI45551833, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=6e-60, Organism=Drosophila melanogaster, GI24644485, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=6e-60, Organism=Drosophila melanogaster, GI24644483, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=8e-60, Organism=Drosophila melanogaster, GI281361218, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=9e-60, Organism=Drosophila melanogaster, GI24644481, Length=385, Percent_Identity=34.5454545454545, Blast_Score=228, Evalue=9e-60, Organism=Drosophila melanogaster, GI24644479, Length=385, Percent_Identity=34.5454545454545, Blast_Score=227, Evalue=1e-59, Organism=Drosophila melanogaster, GI17985987, Length=373, Percent_Identity=36.7292225201072, Blast_Score=224, Evalue=8e-59, Organism=Drosophila melanogaster, GI18857967, Length=429, Percent_Identity=32.8671328671329, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI28575014, Length=382, Percent_Identity=35.6020942408377, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24582080, Length=371, Percent_Identity=35.0404312668464, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI24582078, Length=371, Percent_Identity=35.0404312668464, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI17136248, Length=371, Percent_Identity=35.0404312668464, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI24582075, Length=371, Percent_Identity=35.0404312668464, Blast_Score=213, Evalue=2e-55, Organism=Drosophila melanogaster, GI24583281, Length=364, Percent_Identity=30.7692307692308, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI24583279, Length=364, Percent_Identity=30.7692307692308, Blast_Score=210, Evalue=1e-54, Organism=Drosophila melanogaster, GI17977678, Length=359, Percent_Identity=33.983286908078, Blast_Score=202, Evalue=3e-52, Organism=Drosophila melanogaster, GI21356161, Length=376, Percent_Identity=34.3085106382979, Blast_Score=202, Evalue=5e-52, Organism=Drosophila melanogaster, GI17136814, Length=351, Percent_Identity=36.4672364672365, Blast_Score=202, Evalue=5e-52, Organism=Drosophila melanogaster, GI24584994, Length=374, Percent_Identity=32.8877005347594, Blast_Score=200, Evalue=1e-51, Organism=Drosophila melanogaster, GI24581954, Length=374, Percent_Identity=32.8877005347594, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24581952, Length=374, Percent_Identity=32.8877005347594, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI24581956, Length=374, Percent_Identity=32.8877005347594, Blast_Score=194, Evalue=1e-49, Organism=Drosophila melanogaster, GI281365720, Length=305, Percent_Identity=35.4098360655738, Blast_Score=189, Evalue=4e-48, Organism=Drosophila melanogaster, GI28571808, Length=352, Percent_Identity=34.6590909090909, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI28571809, Length=352, Percent_Identity=34.6590909090909, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI18859659, Length=443, Percent_Identity=30.0225733634311, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI28571338, Length=443, Percent_Identity=30.0225733634311, Blast_Score=169, Evalue=3e-42, Organism=Drosophila melanogaster, GI24642822, Length=390, Percent_Identity=30.7692307692308, Blast_Score=166, Evalue=2e-41, Organism=Drosophila melanogaster, GI24666101, Length=367, Percent_Identity=32.9700272479564, Blast_Score=165, Evalue=7e-41, Organism=Drosophila melanogaster, GI17647335, Length=355, Percent_Identity=30.7042253521127, Blast_Score=163, Evalue=2e-40, Organism=Drosophila melanogaster, GI21355559, Length=368, Percent_Identity=31.25, Blast_Score=158, Evalue=7e-39, Organism=Drosophila melanogaster, GI24643725, Length=389, Percent_Identity=25.9640102827763, Blast_Score=128, Evalue=7e-30, Organism=Drosophila melanogaster, GI24668515, Length=329, Percent_Identity=29.483282674772, Blast_Score=128, Evalue=9e-30, Organism=Drosophila melanogaster, GI19920478, Length=362, Percent_Identity=29.8342541436464, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI20130173, Length=347, Percent_Identity=29.971181556196, Blast_Score=123, Evalue=2e-28, Organism=Drosophila melanogaster, GI24640164, Length=351, Percent_Identity=20.7977207977208, Blast_Score=73, Evalue=5e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005580 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 50463; Mature: 50332
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL CCCCCEEECHHHHHHHHHCCEEEECCCCHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHH NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG HHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCC AHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL CEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHCCCCCCCEEEE FSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP EECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVA CCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHCCCCEEEEEEECHH ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLE HCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHH RDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIL HHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEEE VTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK EECCEEHEEHHHHHHHHHHHHHHCCCCCCCCCEEECCC >Mature Secondary Structure AFSTLKLKPELLENLTTMGYYEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL CCCCEEECHHHHHHHHHCCEEEECCCCHHCCCEEEECCCCCCCCCCCCCCCHHHHHHHH NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG HHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCC AHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL CEEEEECCHHHHHHHHHCCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHCCCCCCCEEEE FSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP EECCCHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVA CCEEEEECCCHHHHHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHCCCCEEEEEEECHH ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFNDQDGYKIALLEEYLE HCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCEEEEEECCCCCEEHHHHHHHH RDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIL HHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHCCEEE VTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK EECCEEHEEHHHHHHHHHHHHHHCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2216714; 8253085; 9097039; 9278503; 9016593; 11350034 [H]