Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 113969041

GI number: 113969041

Start: 808736

End: 810184

Strand: Direct

Name: ydaM [H]

Synonym: Shewmr4_0697

Alternate gene names: 113969041

Gene position: 808736-810184 (Clockwise)

Preceding gene: 113969040

Following gene: 113969042

Centisome position: 17.18

GC content: 47.62

Gene sequence:

>1449_bases
ATGGGTTGCAGATTCTGGGTTTTATTCTTCTGTTTATGCTCACCTTTATGTGTCAATGCCGAGCGCTTGGCCTCATACCT
CAATGCTGCAGACGATCTCAGCAGTGCCACCCAATTAATTCGTTATTGCGTCGATCCCGATTGGTTACCCTATGAAGCGA
TTCGTGATGGTCAACATGTTGGGATTTCGTCGGATTATATTCGTTACATCGAATCCCATTCATCGTTAAAGTTTAGTCTG
GTACCTACCACCTCTTGGACACAAACCTTAGATTTTCTGCAAACGGGACGCTGCAATTTAACTCCGCTACTCAATAAGAC
TGTGACTCGGGAGCAGTTTTTGCATTTTAGCCATGTGTATTTTCGTTCCCCCAATGTATTGGTCTCTCTCAAGGACCAGC
CCTTTTTGCAAGGGTTTGAAAACATCGGTCCGCGCACCTTGGCGGTGCCTGATGGCTATCGTCTCGCCGAATATATTCAG
CATTACTATCCCAAGGTTCGCACTATTACAGTGGCGAGCGAGCCTGCGGGGCTTGAGGCTGTGCTTGAGAAAAAAGTCGA
TCTCTTTGTGGGGTCGATGTTTTCCGTCAATGCCTATATTCAGCAGACGGGATTCAATCACCTAAAAATTGCCGGTTGGG
GTGGCCCGGAGGATGAACTGCGGGTGGGGGTGAGCGCTGGACATGAGGCGCTGCTGCCATTAATCAATCAAGTGCTAGAC
AATGTAGATGAGCTGGAGCGGATCAGGATTTACCAGAAATGGAACAACATCACTATCATCGATGAAACCAACTACTTACT
TATCTATCAAGTGATTGCGGCGACACTGTTAGTCGTGTGCCTACTGGTAACGCGCACTTATATGATCAGTCGTTACAATC
GCCGACTAACCGATAAAAACCAGCAGCTTGAAGAATTGCGTTTGCAGTTAGAGCAAAGCAATACCGAGCTTGAGTTTTTA
TCTACCCATGATCCGCTCACGAAACTCTACAATCGGCATTACTTTAATCGACAATTTGTCCATGAACACCGCGCCGCCGC
TTCCACGCAAGGGGCCATTTGCTTGGTGATGTTAGATATCGATTTCTTTAAAGAGATCAATGACACCTTAGGCCATTCCG
TTGGGGATACTATTTTGATGGAGTTGTCCTCTGTGTTGCAGCATTGTGTGCGTGAAAGCGATGTGGTTGCGCGTTGGGGC
GGGGAAGAGTTTGTGATCCTCTGCCATAACACCTCGCTCGAGGCCGTTAAGTCTCTGTGTCAGCGGATTGCAACAGCCAT
CAAAGATAACCATTTCAGTGGTGATGTGCGCCTGACTTGTAGTTTTGGGATTGCCAAACTCGCTGCAAATGAGCCGATGC
AATCTTGCTTCGAACGGGCAGATAAGGCGCTATATCAGGCAAAAGCACAGGGGCGGGATCAGATTTGTGTCGGTGAAACT
CACCTTTAA

Upstream 100 bases:

>100_bases
TTTCCATAAACAATCTAGGGTTTATTGGTATTATCTTAGTATCGCGTATACACTTTTTTTACCTTGTAAGACTAACTGAT
GAGTGTATTCGAGAAGCGAC

Downstream 100 bases:

>100_bases
AGTGGTAAATACATTGGATGAAATGAGCGTATTCCTAAGCTCGCAGCGGATTTTATTCAGAAATCCTGTATTTATCCTAG
AAAACCTTCCCAGTTGCGCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MGCRFWVLFFCLCSPLCVNAERLASYLNAADDLSSATQLIRYCVDPDWLPYEAIRDGQHVGISSDYIRYIESHSSLKFSL
VPTTSWTQTLDFLQTGRCNLTPLLNKTVTREQFLHFSHVYFRSPNVLVSLKDQPFLQGFENIGPRTLAVPDGYRLAEYIQ
HYYPKVRTITVASEPAGLEAVLEKKVDLFVGSMFSVNAYIQQTGFNHLKIAGWGGPEDELRVGVSAGHEALLPLINQVLD
NVDELERIRIYQKWNNITIIDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEFL
STHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVARWG
GEEFVILCHNTSLEAVKSLCQRIATAIKDNHFSGDVRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICVGET
HL

Sequences:

>Translated_482_residues
MGCRFWVLFFCLCSPLCVNAERLASYLNAADDLSSATQLIRYCVDPDWLPYEAIRDGQHVGISSDYIRYIESHSSLKFSL
VPTTSWTQTLDFLQTGRCNLTPLLNKTVTREQFLHFSHVYFRSPNVLVSLKDQPFLQGFENIGPRTLAVPDGYRLAEYIQ
HYYPKVRTITVASEPAGLEAVLEKKVDLFVGSMFSVNAYIQQTGFNHLKIAGWGGPEDELRVGVSAGHEALLPLINQVLD
NVDELERIRIYQKWNNITIIDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEFL
STHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVARWG
GEEFVILCHNTSLEAVKSLCQRIATAIKDNHFSGDVRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICVGET
HL
>Mature_481_residues
GCRFWVLFFCLCSPLCVNAERLASYLNAADDLSSATQLIRYCVDPDWLPYEAIRDGQHVGISSDYIRYIESHSSLKFSLV
PTTSWTQTLDFLQTGRCNLTPLLNKTVTREQFLHFSHVYFRSPNVLVSLKDQPFLQGFENIGPRTLAVPDGYRLAEYIQH
YYPKVRTITVASEPAGLEAVLEKKVDLFVGSMFSVNAYIQQTGFNHLKIAGWGGPEDELRVGVSAGHEALLPLINQVLDN
VDELERIRIYQKWNNITIIDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKNQQLEELRLQLEQSNTELEFLS
THDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDIDFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVARWGG
EEFVILCHNTSLEAVKSLCQRIATAIKDNHFSGDVRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICVGETH
L

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=167, Percent_Identity=40.1197604790419, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=36.6120218579235, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1787262, Length=238, Percent_Identity=29.4117647058824, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=34.1317365269461, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=33.5403726708075, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787541, Length=169, Percent_Identity=34.3195266272189, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=28.9017341040462, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788956, Length=195, Percent_Identity=30.2564102564103, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=28.6585365853659, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081974, Length=145, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=32.1637426900585, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=28.3018867924528, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 54834; Mature: 54703

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGCRFWVLFFCLCSPLCVNAERLASYLNAADDLSSATQLIRYCVDPDWLPYEAIRDGQHV
CCHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
GISSDYIRYIESHSSLKFSLVPTTSWTQTLDFLQTGRCNLTPLLNKTVTREQFLHFSHVY
CCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHE
FRSPNVLVSLKDQPFLQGFENIGPRTLAVPDGYRLAEYIQHYYPKVRTITVASEPAGLEA
EECCCEEEEECCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCHHH
VLEKKVDLFVGSMFSVNAYIQQTGFNHLKIAGWGGPEDELRVGVSAGHEALLPLINQVLD
HHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCHHHEEECCCCCHHHHHHHHHHHHH
NVDELERIRIYQKWNNITIIDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKN
CHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QQLEELRLQLEQSNTELEFLSTHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDI
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECH
DFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVARWGGEEFVILCHNTSLEAVKSLC
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHHH
QRIATAIKDNHFSGDVRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICVGET
HHHHHHHCCCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCC
HL
CC
>Mature Secondary Structure 
GCRFWVLFFCLCSPLCVNAERLASYLNAADDLSSATQLIRYCVDPDWLPYEAIRDGQHV
CHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCC
GISSDYIRYIESHSSLKFSLVPTTSWTQTLDFLQTGRCNLTPLLNKTVTREQFLHFSHVY
CCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHE
FRSPNVLVSLKDQPFLQGFENIGPRTLAVPDGYRLAEYIQHYYPKVRTITVASEPAGLEA
EECCCEEEEECCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCHHH
VLEKKVDLFVGSMFSVNAYIQQTGFNHLKIAGWGGPEDELRVGVSAGHEALLPLINQVLD
HHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCHHHEEECCCCCHHHHHHHHHHHHH
NVDELERIRIYQKWNNITIIDETNYLLIYQVIAATLLVVCLLVTRTYMISRYNRRLTDKN
CHHHHHHHHHHEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
QQLEELRLQLEQSNTELEFLSTHDPLTKLYNRHYFNRQFVHEHRAAASTQGAICLVMLDI
HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEECH
DFFKEINDTLGHSVGDTILMELSSVLQHCVRESDVVARWGGEEFVILCHNTSLEAVKSLC
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCHHHHHHHH
QRIATAIKDNHFSGDVRLTCSFGIAKLAANEPMQSCFERADKALYQAKAQGRDQICVGET
HHHHHHHCCCCCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCC
HL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]