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The map label for this gene is nosD [H]

Identifier: 113968839

GI number: 113968839

Start: 566104

End: 567393

Strand: Direct

Name: nosD [H]

Synonym: Shewmr4_0495

Alternate gene names: 113968839

Gene position: 566104-567393 (Clockwise)

Preceding gene: 113968838

Following gene: 113968840

Centisome position: 12.03

GC content: 53.64

Gene sequence:

>1290_bases
ATGTGGCGCGGTTTGCTCCTCGGTTGGCTCTGTAGCTTATCCCTTGTTGGGTTAGCGCAGGAGTTTAGGGTCACAGATAC
TGCGGCTTTAACCCAAGCCCTCGCGCGGGCGCAGGATGGCGACACTGTTGTGCTCGCCACCGCCGTTTACGAAGGCAATT
TTAATGTCAGCCGCACGATTCATCTTAAGGGCGAAGCGGGGGCGACTCTTGATGCCCTGCGCCAAGGTAGCGCCTTAATC
ATTGCTGCGCCCAAGGTCATCGTCGAAGGGCTGAATATCCGTCACTGGGGGCAGGATCTTTATTACCAGAATGCGGGGAT
CTTGCTGCAAGTGGGTGCTGACGAAGTGCTCATTAAGGGCAATCGGCTGGTGGGTGATGGCTTTGGTATCTATGGCGAGC
AGCTGAGTGCGCCCCGCATTATGGAAAACAGCATCAGCGGTAATGGTGCCATTTATGTGTTAGATAGGGGGGACGGCGTC
TTCCTCAAGCATGTGAGCGCGCCGCAGGTGCAAGATAATCATTTTATTTTTGTCCGCGATGGCGTGTATCTCGAGTCGGT
GACGGACAGCCAAATCCACCATAATCAATTCGCTAAGTTGCAATACGGCATCCATTACATGTACACCCGAGGCGATGAAG
CCTCAAATAATCAAGCCATTAGCGTCGATGGCGGTTATGCCTTGATGAACTCGCAGCACATCTATCTACACCACAATAAG
GTCAGCCAAGCGCGGGACTTTGGCATTCTGCTCAATATCACTGACGATGCCCATATTCAGGCGAACATCGCGACTGAGGT
GGTTAATCCCCAAGGCTCTGTGGAGCTGGGTAACGAGGGCAAGGGCATTTTTATCTACGCCGCGCAGAATAATCGCATCG
AGGCGAACGAGTTTAGCCATAGCGATACCGGGATCAGCATGGCCATGGGCGGCGAAGCAAATCGCCTTTGGCATAACCGG
ATTGTCGCCAACCAAACCCAAGTCAAATACGTTGGCGAGGCGCAACTCGAGTGGAGTTATCAGGGGCAGGGCAATTACTG
GTCCGAATATCAGGGCTGGGACACTAATGGCGATGGTGTCGGGGATATAGTCCATCGGCCCAACGACAGCTTAGACAAAC
TCTTTTGGCTCTATCCCGAGGCCAAGCTCTTGATGGAAAGCCCAGTGGTCTTGCTGCTGCGTTGGGTGGAGCGGCAGTTT
CAGCCAACGAGTGCGAGCGGCGTGAGTGACAGCTTTCCCTTAATGGGATGGAAAACCGAGGAGATGGGCAATGAGCCATT
TCAGCAATGA

Upstream 100 bases:

>100_bases
AGCCGCCGCCGAGGCCTTTGCTCAAGAATACGGTGGCCGCGTGCTTCGATTCGATGAGATCACCCTCGAATTACTGGCCG
GCGATAAGTAGGCGATTGCT

Downstream 100 bases:

>100_bases
TGCACAGCATAAACAGGCGCTTACCTTGATGAAAAACGAGGCTTCATCCCAAGGACAAGTGGCGATTAAGGCCATTGGGC
TTTACAAGCGTTATGCGACA

Product: periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 429

Protein sequence:

>429_residues
MWRGLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFNVSRTIHLKGEAGATLDALRQGSALI
IAAPKVIVEGLNIRHWGQDLYYQNAGILLQVGADEVLIKGNRLVGDGFGIYGEQLSAPRIMENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIYLHHNK
VSQARDFGILLNITDDAHIQANIATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTSASGVSDSFPLMGWKTEEMGNEPFQQ

Sequences:

>Translated_429_residues
MWRGLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFNVSRTIHLKGEAGATLDALRQGSALI
IAAPKVIVEGLNIRHWGQDLYYQNAGILLQVGADEVLIKGNRLVGDGFGIYGEQLSAPRIMENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIYLHHNK
VSQARDFGILLNITDDAHIQANIATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTSASGVSDSFPLMGWKTEEMGNEPFQQ
>Mature_429_residues
MWRGLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFNVSRTIHLKGEAGATLDALRQGSALI
IAAPKVIVEGLNIRHWGQDLYYQNAGILLQVGADEVLIKGNRLVGDGFGIYGEQLSAPRIMENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIYLHHNK
VSQARDFGILLNITDDAHIQANIATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTSASGVSDSFPLMGWKTEEMGNEPFQQ

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 47474; Mature: 47474

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRGLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFNVSRTI
CCCHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
HLKGEAGATLDALRQGSALIIAAPKVIVEGLNIRHWGQDLYYQNAGILLQVGADEVLIKG
EECCCCCCHHHHHHCCCEEEEECCHHHCCCCCEEECCCCEEEECCCEEEEECCCEEEEEC
NRLVGDGFGIYGEQLSAPRIMENSISGNGAIYVLDRGDGVFLKHVSAPQVQDNHFIFVRD
CEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEC
GVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIYLHHNK
CEEEECCCCCHHHHHHHEEEEECEEEEEECCCCCCCCCEEEECCCEEEECCCEEEEECCC
VSQARDFGILLNITDDAHIQANIATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSH
CCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCEEECCCCCC
SDTGISMAMGGEANRLWHNRIVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGV
CCCCEEEEECCCCCCEEHHHEECCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCC
GDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQFQPTSASGVSDSFPLMGWKTE
CHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH
EMGNEPFQQ
HCCCCCCCC
>Mature Secondary Structure
MWRGLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFNVSRTI
CCCHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
HLKGEAGATLDALRQGSALIIAAPKVIVEGLNIRHWGQDLYYQNAGILLQVGADEVLIKG
EECCCCCCHHHHHHCCCEEEEECCHHHCCCCCEEECCCCEEEECCCEEEEECCCEEEEEC
NRLVGDGFGIYGEQLSAPRIMENSISGNGAIYVLDRGDGVFLKHVSAPQVQDNHFIFVRD
CEEEECCCCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEC
GVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIYLHHNK
CEEEECCCCCHHHHHHHEEEEECEEEEEECCCCCCCCCEEEECCCEEEECCCEEEEECCC
VSQARDFGILLNITDDAHIQANIATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSH
CCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCEEECCCCCC
SDTGISMAMGGEANRLWHNRIVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGV
CCCCEEEEECCCCCCEEHHHEECCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCC
GDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQFQPTSASGVSDSFPLMGWKTE
CHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHH
EMGNEPFQQ
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]