| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is fabG [H]
Identifier: 113968652
GI number: 113968652
Start: 333593
End: 334354
Strand: Direct
Name: fabG [H]
Synonym: Shewmr4_0308
Alternate gene names: 113968652
Gene position: 333593-334354 (Clockwise)
Preceding gene: 113968650
Following gene: 113968653
Centisome position: 7.09
GC content: 51.44
Gene sequence:
>762_bases ATGCGTTTATTGAATAAAACTGCCGTGGTGACTGGGGCTGCCGGGGGCATAGGGCAGGCCATCATTCGTAAACTGCTCGA CGAAGGGGCTAGCGTCGTTGCCGCCGATCTGTCTGCCGATGCGCTGAAAGTATTTGATGATTTTCCTGCCGACAAGCTGT CAATCTTTAGCGTAGATGTCACCGATTACAGCCAAGTTGAGGCTATGGTCAAGCATGCGGCCAAGCAGTTTGGCCAGCTC GATATTCTGATCAATAACGCGGGTATTGGTTTGGCTAAACCGCTGTTACAGCATGATCCTATTAATGATTTTGAACCTGT CACCAATGTTAACCAAAGAGGTGTATATCACGGCATCCTCGCTGGTGGGCGCCAATTCCAAGCCCAAGGCACTCGGGGTG TGATCCTCAATACCTCTTCTGTTTATGCGCAAATCGCCTCAGAAATGACCTTCACCTACAACGTCAGTAAAGCGGCCGTC GATATGATGACCAAATGCGCCGCGCTTGAGTTTGCACCGCTTGGCGTGCGGGTCTGTGCCGTGGCGCCGGGCCGTGTCGA TACACCTATGTTGCGTCAGTATGAGGCGCTGGGACTGTGGGAACACATTCGCAAAGAACAAATGCGCCAAGAATTTACCC AACCGAATGAGATTGCCGATGTGGTGGCGTTTCTCGTCAGTGATGAGGCCAATTGCATCAATGGTTGCACAGTGAACGCC TCCGACGGTTTTGAAAACTTTAAATATCCACTGCTGGGGTAG
Upstream 100 bases:
>100_bases TATCAAATTTGGCTCGTATAAAGTCAAGATGATGCGCAATTTATCATCTAAATTAACATTGCCTTAATAATTAAATTGAT AAATACAAAAGAGGACAGCT
Downstream 100 bases:
>100_bases TGGTAGCTCGACCCATAAACACTATAACAACAATGAGGAATGCAAACATGGCTCTACCAGAAGTGATTAATCATCAAGAC CTTTTATTAACCCTCAATAC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 253; Mature: 253
Protein sequence:
>253_residues MRLLNKTAVVTGAAGGIGQAIIRKLLDEGASVVAADLSADALKVFDDFPADKLSIFSVDVTDYSQVEAMVKHAAKQFGQL DILINNAGIGLAKPLLQHDPINDFEPVTNVNQRGVYHGILAGGRQFQAQGTRGVILNTSSVYAQIASEMTFTYNVSKAAV DMMTKCAALEFAPLGVRVCAVAPGRVDTPMLRQYEALGLWEHIRKEQMRQEFTQPNEIADVVAFLVSDEANCINGCTVNA SDGFENFKYPLLG
Sequences:
>Translated_253_residues MRLLNKTAVVTGAAGGIGQAIIRKLLDEGASVVAADLSADALKVFDDFPADKLSIFSVDVTDYSQVEAMVKHAAKQFGQL DILINNAGIGLAKPLLQHDPINDFEPVTNVNQRGVYHGILAGGRQFQAQGTRGVILNTSSVYAQIASEMTFTYNVSKAAV DMMTKCAALEFAPLGVRVCAVAPGRVDTPMLRQYEALGLWEHIRKEQMRQEFTQPNEIADVVAFLVSDEANCINGCTVNA SDGFENFKYPLLG >Mature_253_residues MRLLNKTAVVTGAAGGIGQAIIRKLLDEGASVVAADLSADALKVFDDFPADKLSIFSVDVTDYSQVEAMVKHAAKQFGQL DILINNAGIGLAKPLLQHDPINDFEPVTNVNQRGVYHGILAGGRQFQAQGTRGVILNTSSVYAQIASEMTFTYNVSKAAV DMMTKCAALEFAPLGVRVCAVAPGRVDTPMLRQYEALGLWEHIRKEQMRQEFTQPNEIADVVAFLVSDEANCINGCTVNA SDGFENFKYPLLG
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=30.9236947791165, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=34.020618556701, Blast_Score=91, Evalue=8e-19, Organism=Homo sapiens, GI31542939, Length=233, Percent_Identity=30.0429184549356, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI5031737, Length=239, Percent_Identity=28.4518828451883, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI66933014, Length=223, Percent_Identity=31.8385650224215, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=30, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=27.3809523809524, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=28.3842794759825, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI83715985, Length=179, Percent_Identity=32.4022346368715, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=28.515625, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4503301, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI22507405, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI209862901, Length=217, Percent_Identity=30.4147465437788, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI19923983, Length=217, Percent_Identity=30.4147465437788, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=31.2138728323699, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.4584980237154, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI40254992, Length=226, Percent_Identity=28.7610619469027, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI87082100, Length=254, Percent_Identity=33.0708661417323, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=30.6451612903226, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=30.0813008130081, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1790717, Length=243, Percent_Identity=28.3950617283951, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=26.5060240963855, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=28.2786885245902, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI2367365, Length=240, Percent_Identity=28.75, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787820, Length=181, Percent_Identity=26.5193370165746, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=29.2, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1788459, Length=193, Percent_Identity=26.4248704663212, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI87082160, Length=241, Percent_Identity=24.4813278008299, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=32.0987654320988, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562910, Length=245, Percent_Identity=28.9795918367347, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994600, Length=256, Percent_Identity=30.078125, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17562906, Length=250, Percent_Identity=30.4, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560150, Length=251, Percent_Identity=29.8804780876494, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=30.078125, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI193204405, Length=249, Percent_Identity=32.5301204819277, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17531453, Length=247, Percent_Identity=32.3886639676113, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562990, Length=251, Percent_Identity=29.8804780876494, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538182, Length=247, Percent_Identity=31.1740890688259, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17563726, Length=243, Percent_Identity=26.7489711934156, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562908, Length=253, Percent_Identity=28.4584980237154, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=30.5343511450382, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI72000259, Length=253, Percent_Identity=28.8537549407115, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560220, Length=243, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17559104, Length=245, Percent_Identity=27.7551020408163, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17562904, Length=258, Percent_Identity=27.1317829457364, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=28.030303030303, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=30.1204819277108, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17538486, Length=242, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=26.2745098039216, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560676, Length=254, Percent_Identity=27.1653543307087, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.9850746268657, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=26.615969581749, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=27.9166666666667, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17507613, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI32563809, Length=227, Percent_Identity=28.6343612334802, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI86565303, Length=213, Percent_Identity=28.169014084507, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=32.48730964467, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI115534660, Length=216, Percent_Identity=26.3888888888889, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=26.4227642276423, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=28.0487804878049, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI17737361, Length=233, Percent_Identity=33.9055793991416, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=34.3873517786561, Blast_Score=108, Evalue=4e-24, Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=32.3076923076923, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=31.4516129032258, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=28.90625, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=192, Percent_Identity=31.7708333333333, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=28.1746031746032, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=31.3492063492063, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI221331218, Length=219, Percent_Identity=30.5936073059361, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24665243, Length=219, Percent_Identity=30.5936073059361, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24665247, Length=219, Percent_Identity=30.1369863013699, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI221331216, Length=219, Percent_Identity=30.1369863013699, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI116007236, Length=205, Percent_Identity=32.6829268292683, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI116007238, Length=91, Percent_Identity=45.0549450549451, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24648693, Length=238, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI21355889, Length=238, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24663911, Length=244, Percent_Identity=27.4590163934426, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 27312; Mature: 27312
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLNKTAVVTGAAGGIGQAIIRKLLDEGASVVAADLSADALKVFDDFPADKLSIFSVDV CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEEEEEC TDYSQVEAMVKHAAKQFGQLDILINNAGIGLAKPLLQHDPINDFEPVTNVNQRGVYHGIL CCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH AGGRQFQAQGTRGVILNTSSVYAQIASEMTFTYNVSKAAVDMMTKCAALEFAPLGVRVCA HCCCEEECCCCCEEEEECHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHEECCCCEEEEE VAPGRVDTPMLRQYEALGLWEHIRKEQMRQEFTQPNEIADVVAFLVSDEANCINGCTVNA ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEC SDGFENFKYPLLG CCCCCCCCCCCCC >Mature Secondary Structure MRLLNKTAVVTGAAGGIGQAIIRKLLDEGASVVAADLSADALKVFDDFPADKLSIFSVDV CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCEEEEEEEC TDYSQVEAMVKHAAKQFGQLDILINNAGIGLAKPLLQHDPINDFEPVTNVNQRGVYHGIL CCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH AGGRQFQAQGTRGVILNTSSVYAQIASEMTFTYNVSKAAVDMMTKCAALEFAPLGVRVCA HCCCEEECCCCCEEEEECHHHHHHHHHCEEEEEEHHHHHHHHHHHHHHHEECCCCEEEEE VAPGRVDTPMLRQYEALGLWEHIRKEQMRQEFTQPNEIADVVAFLVSDEANCINGCTVNA ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEC SDGFENFKYPLLG CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]