| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113968645
Identifier: 113968645
GI number: 113968645
Start: 321742
End: 322875
Strand: Direct
Name: 113968645
Synonym: Shewmr4_0301
Alternate gene names: NA
Gene position: 321742-322875 (Clockwise)
Preceding gene: 113968644
Following gene: 113968646
Centisome position: 6.84
GC content: 45.77
Gene sequence:
>1134_bases ATGATGAAAAAATCCACCCGGTTTATGTTGTCCATGGTGGCAACCGCTATCGCACTATCTCAAACTAACGCCTTTGCCGC AGAGCAAGAAGATGGCATCAATGTTGGCGGCGCCGTGCGCGTTAACTATGGCTATCGCGATTATGATGAAAAATCGAAGG ATAAAGGCGGCGACTTTAACTTCGACATGGCCGCCATCAAATTTGATGGTAAAAAAGGCGATTTCGGTTTAGCGGCGGAA TACCGTTTTACCTCAGGCACTAACTACATCAAGTATGGTTATGGCTACTACAACATTGATCCAGACTGGCAACTGCAATT TGGTATCAACAAAGTGCCCTTTGGTAACCGCGAGTTTATCTCTAACAGTTGGTGGTTTGGTCTGCCTTACTATTTAGGCT TTGAAGATGACCATGACATCGGCTTAAAAGCGACCTATGAGAAAAACGGCTGGCACACGGATTTAGCGTTTTATAAAAAT GCCGAATACGGCCCAACCGAAAACAAGCGTTATTCAACTGACTTGTATACCGGCACCATCAATGGCACTGAATACAACAA CGAAGAAACCAACCAACTCAACGTGCGCCAAACCTACACCGCCGAATACGAAGGTGGCGCAACCACTTTTGGTGGCTCAG TACAGGTCGGCCAAATCTACAACAGCAAAACCGGTAATAATGGCGACCGCTATGCTGTCGCACTGCATTTAGACAGCAGC TACAACGGCTGGAGCCTACAAATGCAAGCCATGCAGTATGAATACAATGCTGCAGATGCTATCGACGACAACAAAATTGG CGTATCGGTGGTGAGCTGGCAGTACGAAATCGCCTCAAAAGGCCAAGCCTATAACATCAACATTGCCAAAACGGTTAACA CAGATTGGGGCAGCATTAAGTTCTATAACGACTTTGGTTTAATGACACCTGATGTTGATGACGATAGCTACGACAACAGC ATGCAAAACGTCACCGGTATGGCGATTTCTGCTGGCCCAACGTACACCATGATTGACTTTGTGATGGGTAAAAACATGAC TTTCTCAACCGCCAATAACGACCACGTTGGCTTACCTGAAGTCGGTAACGATTGGGATAAACGAATCAACATTAACTTTG GTTACTACTTCTAG
Upstream 100 bases:
>100_bases AGCATGAGAAAAAGGCTCCAGTGTGCGCTGAATGCCACCGCACTTGGTTCAAAGAAATGTAATTTAATTTTTATAATACA AAAACTTAAGAAAGGTAATG
Downstream 100 bases:
>100_bases TATTTGCGCAGTTTAGGACGTCCCTCCTCCCTGCCGTTTTAAACTGCTCAACCTTTTGGCCCTATTCGTTAGGGCTTTTT TTTTTACGTTTTCCCCATAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MMKKSTRFMLSMVATAIALSQTNAFAAEQEDGINVGGAVRVNYGYRDYDEKSKDKGGDFNFDMAAIKFDGKKGDFGLAAE YRFTSGTNYIKYGYGYYNIDPDWQLQFGINKVPFGNREFISNSWWFGLPYYLGFEDDHDIGLKATYEKNGWHTDLAFYKN AEYGPTENKRYSTDLYTGTINGTEYNNEETNQLNVRQTYTAEYEGGATTFGGSVQVGQIYNSKTGNNGDRYAVALHLDSS YNGWSLQMQAMQYEYNAADAIDDNKIGVSVVSWQYEIASKGQAYNINIAKTVNTDWGSIKFYNDFGLMTPDVDDDSYDNS MQNVTGMAISAGPTYTMIDFVMGKNMTFSTANNDHVGLPEVGNDWDKRININFGYYF
Sequences:
>Translated_377_residues MMKKSTRFMLSMVATAIALSQTNAFAAEQEDGINVGGAVRVNYGYRDYDEKSKDKGGDFNFDMAAIKFDGKKGDFGLAAE YRFTSGTNYIKYGYGYYNIDPDWQLQFGINKVPFGNREFISNSWWFGLPYYLGFEDDHDIGLKATYEKNGWHTDLAFYKN AEYGPTENKRYSTDLYTGTINGTEYNNEETNQLNVRQTYTAEYEGGATTFGGSVQVGQIYNSKTGNNGDRYAVALHLDSS YNGWSLQMQAMQYEYNAADAIDDNKIGVSVVSWQYEIASKGQAYNINIAKTVNTDWGSIKFYNDFGLMTPDVDDDSYDNS MQNVTGMAISAGPTYTMIDFVMGKNMTFSTANNDHVGLPEVGNDWDKRININFGYYF >Mature_377_residues MMKKSTRFMLSMVATAIALSQTNAFAAEQEDGINVGGAVRVNYGYRDYDEKSKDKGGDFNFDMAAIKFDGKKGDFGLAAE YRFTSGTNYIKYGYGYYNIDPDWQLQFGINKVPFGNREFISNSWWFGLPYYLGFEDDHDIGLKATYEKNGWHTDLAFYKN AEYGPTENKRYSTDLYTGTINGTEYNNEETNQLNVRQTYTAEYEGGATTFGGSVQVGQIYNSKTGNNGDRYAVALHLDSS YNGWSLQMQAMQYEYNAADAIDDNKIGVSVVSWQYEIASKGQAYNINIAKTVNTDWGSIKFYNDFGLMTPDVDDDSYDNS MQNVTGMAISAGPTYTMIDFVMGKNMTFSTANNDHVGLPEVGNDWDKRININFGYYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42509; Mature: 42509
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKKSTRFMLSMVATAIALSQTNAFAAEQEDGINVGGAVRVNYGYRDYDEKSKDKGGDFN CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC FDMAAIKFDGKKGDFGLAAEYRFTSGTNYIKYGYGYYNIDPDWQLQFGINKVPFGNREFI EEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCCCCHHHC SNSWWFGLPYYLGFEDDHDIGLKATYEKNGWHTDLAFYKNAEYGPTENKRYSTDLYTGTI CCCEEECCCEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEECEEEEEEE NGTEYNNEETNQLNVRQTYTAEYEGGATTFGGSVQVGQIYNSKTGNNGDRYAVALHLDSS CCCCCCCCCCCEEEEEEEEEEEECCCCEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC YNGWSLQMQAMQYEYNAADAIDDNKIGVSVVSWQYEIASKGQAYNINIAKTVNTDWGSIK CCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEE FYNDFGLMTPDVDDDSYDNSMQNVTGMAISAGPTYTMIDFVMGKNMTFSTANNDHVGLPE EECCCCCCCCCCCCCCCCCCHHHCEEEEEECCCCEEEEEEHHCCCEEEECCCCCCCCCCC VGNDWDKRININFGYYF CCCCCCCEEEEEEEEEC >Mature Secondary Structure MMKKSTRFMLSMVATAIALSQTNAFAAEQEDGINVGGAVRVNYGYRDYDEKSKDKGGDFN CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC FDMAAIKFDGKKGDFGLAAEYRFTSGTNYIKYGYGYYNIDPDWQLQFGINKVPFGNREFI EEEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCEEECCCCEEEEECCCCCCCCCHHHC SNSWWFGLPYYLGFEDDHDIGLKATYEKNGWHTDLAFYKNAEYGPTENKRYSTDLYTGTI CCCEEECCCEEECCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEECEEEEEEE NGTEYNNEETNQLNVRQTYTAEYEGGATTFGGSVQVGQIYNSKTGNNGDRYAVALHLDSS CCCCCCCCCCCEEEEEEEEEEEECCCCEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC YNGWSLQMQAMQYEYNAADAIDDNKIGVSVVSWQYEIASKGQAYNINIAKTVNTDWGSIK CCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEEECCCCCEEE FYNDFGLMTPDVDDDSYDNSMQNVTGMAISAGPTYTMIDFVMGKNMTFSTANNDHVGLPE EECCCCCCCCCCCCCCCCCCHHHCEEEEEECCCCEEEEEEHHCCCEEEECCCCCCCCCCC VGNDWDKRININFGYYF CCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA