| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is yihV [C]
Identifier: 113968611
GI number: 113968611
Start: 286831
End: 287670
Strand: Direct
Name: yihV [C]
Synonym: Shewmr4_0267
Alternate gene names: 113968611
Gene position: 286831-287670 (Clockwise)
Preceding gene: 113968609
Following gene: 113968612
Centisome position: 6.09
GC content: 54.17
Gene sequence:
>840_bases ATGGCAAATATTTTGCTGGTGGCCAATCTTAACTGTGACCGAGTGTTGATCCTTGATAAACCATTGAAAACGGGCGGTCG CTTTCATTATCAAGATGGCGGACAAAGGCTCGGCGGTGGCGGCGCTAATACCGGGCTTGGGCTGGTGTGGGCGGGCCATA GGGTTGCACTCGTGAGCCAAGTCGGGCGGGATGAAATGGGCGATTGGGTTATTGCTGAGGCGAGTACTCAGGGACTCGAT TGTCGTTTAGTGCAGCGCCGCGCGGGAAATACCTGTGAAATGTTACTGGTGATGACACCCGACGGTGAGCGCACCATCAT TCGTCCGCAGCGTCCGGTTTTTGAATTAGCAGTGCCGCCCAAATGGCAACATTGGGATGCGCTGTATTTTAATACCTCGG CTGAGGGCACGGTTAGTTGGGCGAAAACCGCGCTGGATCATTGTCTTGTCGTGGCGCAACTGGCGAAGGATGACAGACCT CGTCCTTGCCACGTGTTGCTTGCGTCAGTGAGTGATATGCAAGGCCGCTGTGATGTCGCCTCATGGGATTATGGCGTGAG TATCGGTGGTGAATCGCTACGCTATTTTGTGGTGACTGATGGTGTACGCGGCGCTAAGGTTTATACCCAAAATGATGTTC AGCATGTGCCCGCAGTGCCAGCTGAAGTGGTTGATACCACAGGTGCTGGAGATGCCTATGCCGCAGGGCTTATCCATGGA CTCTGCGCGGGTAAAACCATTACCGAAGCCATGGCCGAAGGCGCGATTTGGGCAGCATTTGCCGTGGCCACCGACAGCTC TATCCCCGGTGAAGCATTGAAACACTATTTAGAAGGTTAG
Upstream 100 bases:
>100_bases CGATTGTGTCACCTGAGGTTTTGGTCTAGATTGATGGCTCTTTTAACCGAGTCATCGCCGAGAGTTAGCGCGGTCTGTTC TTTTATTATGGAGTCCTGTC
Downstream 100 bases:
>100_bases AATGGCTGATGAGCCTCAATGTGACGTGCAAGGTAAGTCATCTTTCTGTCATTTAGGCTTGCTAGAGTGTGTTCAGTGAC GAATAGCTCTTGTCCCTTAA
Product: ribokinase-like domain-containing protein
Products: NA
Alternate protein names: Carbohydrate Kinase; Carbohydrate Kinase PfkB Family; Site-Specific DNA-Methyltransferase; PfkB Family Carbohydrate Kinase; PfkB Domain Protein; Carbohydrate Kinase PfkB
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MANILLVANLNCDRVLILDKPLKTGGRFHYQDGGQRLGGGGANTGLGLVWAGHRVALVSQVGRDEMGDWVIAEASTQGLD CRLVQRRAGNTCEMLLVMTPDGERTIIRPQRPVFELAVPPKWQHWDALYFNTSAEGTVSWAKTALDHCLVVAQLAKDDRP RPCHVLLASVSDMQGRCDVASWDYGVSIGGESLRYFVVTDGVRGAKVYTQNDVQHVPAVPAEVVDTTGAGDAYAAGLIHG LCAGKTITEAMAEGAIWAAFAVATDSSIPGEALKHYLEG
Sequences:
>Translated_279_residues MANILLVANLNCDRVLILDKPLKTGGRFHYQDGGQRLGGGGANTGLGLVWAGHRVALVSQVGRDEMGDWVIAEASTQGLD CRLVQRRAGNTCEMLLVMTPDGERTIIRPQRPVFELAVPPKWQHWDALYFNTSAEGTVSWAKTALDHCLVVAQLAKDDRP RPCHVLLASVSDMQGRCDVASWDYGVSIGGESLRYFVVTDGVRGAKVYTQNDVQHVPAVPAEVVDTTGAGDAYAAGLIHG LCAGKTITEAMAEGAIWAAFAVATDSSIPGEALKHYLEG >Mature_278_residues ANILLVANLNCDRVLILDKPLKTGGRFHYQDGGQRLGGGGANTGLGLVWAGHRVALVSQVGRDEMGDWVIAEASTQGLDC RLVQRRAGNTCEMLLVMTPDGERTIIRPQRPVFELAVPPKWQHWDALYFNTSAEGTVSWAKTALDHCLVVAQLAKDDRPR PCHVLLASVSDMQGRCDVASWDYGVSIGGESLRYFVVTDGVRGAKVYTQNDVQHVPAVPAEVVDTTGAGDAYAAGLIHGL CAGKTITEAMAEGAIWAAFAVATDSSIPGEALKHYLEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29882; Mature: 29751
Theoretical pI: Translated: 5.84; Mature: 5.84
Prosite motif: PS00584 PFKB_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANILLVANLNCDRVLILDKPLKTGGRFHYQDGGQRLGGGGANTGLGLVWAGHRVALVSQ CCEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEHHH VGRDEMGDWVIAEASTQGLDCRLVQRRAGNTCEMLLVMTPDGERTIIRPQRPVFELAVPP HCCCCCCCEEEEECCCCCCCEEEEHHHCCCCEEEEEEECCCCCEEEECCCCCEEEEECCC KWQHWDALYFNTSAEGTVSWAKTALDHCLVVAQLAKDDRPRPCHVLLASVSDMQGRCDVA CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCC SWDYGVSIGGESLRYFVVTDGVRGAKVYTQNDVQHVPAVPAEVVDTTGAGDAYAAGLIHG CCCCCEEECCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH LCAGKTITEAMAEGAIWAAFAVATDSSIPGEALKHYLEG HHCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCC >Mature Secondary Structure ANILLVANLNCDRVLILDKPLKTGGRFHYQDGGQRLGGGGANTGLGLVWAGHRVALVSQ CEEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCEEEEHHH VGRDEMGDWVIAEASTQGLDCRLVQRRAGNTCEMLLVMTPDGERTIIRPQRPVFELAVPP HCCCCCCCEEEEECCCCCCCEEEEHHHCCCCEEEEEEECCCCCEEEECCCCCEEEEECCC KWQHWDALYFNTSAEGTVSWAKTALDHCLVVAQLAKDDRPRPCHVLLASVSDMQGRCDVA CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHCCCCCCCCC SWDYGVSIGGESLRYFVVTDGVRGAKVYTQNDVQHVPAVPAEVVDTTGAGDAYAAGLIHG CCCCCEEECCCCEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHH LCAGKTITEAMAEGAIWAAFAVATDSSIPGEALKHYLEG HHCCHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Phosphotransferases with an alcohol group as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA