Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 113968579

GI number: 113968579

Start: 249336

End: 251315

Strand: Direct

Name: ccmF [H]

Synonym: Shewmr4_0234

Alternate gene names: 113968579

Gene position: 249336-251315 (Clockwise)

Preceding gene: 113968577

Following gene: 113968580

Centisome position: 5.3

GC content: 48.94

Gene sequence:

>1980_bases
ATGATCCCAGAACTTGGACACTTTTCGCTGATTATAGGAGTGGCATTCGCCTTCTTATTAATCAGCGTTCCCCTTATAGG
TGTTGCCCGTAAAGACCAATATCTAGTGAGGTATGCTTGGCCGTTAACCTACGGAATGTTCTTCTTTATCGCTTTATCCG
TAGTATCTCTTGGTTACAGCTTTGCCGTTGATGACTTCTCCGTTGCCTATGTGGCACATCACTCGAATTCCCAGTTACCT
ATCTTCTTTAAGATTGCGGCCGTATGGGGCGGTCATGAAGGGTCGCTGCTGTTCTGGGTGTTTGCACTATCGACGTGGGC
GGCTTCAGTTGCCTTATTCAGTAAAGGCTTAGAAGAAGTGTTCACTGCTAGGGTACTGGCGGTACTGGCATTGATCGTGA
TTGGCTTCAGCTTATTTATGCTCCTCACATCTAGCCCATTTGAACGCTTATTTCCAATGCCTGCCGAAGGTCGCGACTTA
AACCCAATGCTGCAGGACGTGGGCTTAATCTTCCATCCTCCAATGCTGTACTTAGGTTATGTTGGTTTCTCGGTGAGCTT
TGCCTTCGCGATTGCAGCTCTTATGAGTGGTCACCTTGATTCTGCGTGGGCGCGTTGGTCACGTCCTTGGACCTTAGCTG
CTTGGATTTTCCTCACGGGCGGTATTGCATTAGGTTCTTGGTGGGCATACTACGAATTAGGCTGGGGTGGCTGGTGGTTC
TGGGATCCCGTTGAAAACGCCTCCTTTATGCCTTGGTTAGTGGGTACTGCATTAGTGCATTCACTGATCGTGACCGAAAA
ACGCGGTGCTTTCCGCAACTGGACCGTCTTACTGTCTATCTTCGCTTTCTCATTAAGCTTACTCGGTACCTTTATCGTAC
GTTCGGGTGTACTGACTTCAGTGCACTCCTTCGCAGCCGATCCAAGCCGCGGTATGTTTATTCTGTTGCTGCTTGGTTTA
GCCATCGGCGGGTCGCTCACGCTGTTTGCCTTCCGCGCCAGCGAAATGAGCAGCCCGGCTCGTTTCGAGCTGAAATCAAA
AGAAACCATGCTGTTAGTCTGTAACGTGTTACTCACGGTTGCAGCGGGTACTGTTCTGTTAGGTACTTTATACCCACTGC
TGATCGATGCATTAGGCATGGGTAAGATTTCTGTTGGACCTCCATACTTCAACGCTGTGTTTGTGCCTATCGTTCTCGTA
CTGTTTGGCTTCATGGGCGTTGGTCCAATCATTCGTTGGAAGAAATCCAAAGCTGGTGAGCTCAAGCGCCAATTGCTGGT
GCCTGCATTAGTGTCAGCCGCAATTGGTATCGTGACACCATTTATTGTCGATGGTGCCTTTAACACTTGGGTTGCCTGTG
GTATCGCCGCGGCCGCTTGGATTGTGTTGGCAACCGCAAGAGCTGCTTACAATATCGTTAAGCCAAAAGACGGTGAATTA
AGCATGGCGCGTATGGGGCGTAGCCAATTGGGTATGATTTTGGCCCACTTAGGTATTGCCGTGTCAGTGATCGGTGCCAC
TATGGTGTCGAACTACTCGATTGAGAAGAGTGTGCGTATGGGGCCTGGTGTGAGCCAAGAGCTTGCGGGTTACACCTTTA
AGTATCTCGAAACTAAGAACGTTGTCGGTCCTAACTACACCGCACAACAAGGTCAAATTGAGATTTATAAAGGCGATAAA
CTGCTGACCTTACTCAAGCCCGATCGTCGCCAATACAATGTGCGTACCATGGATATGACCGAAGCCGGTATCGATTGGGG
TCTGTTCCGTGACTTATATGTCACCATGGGCGATCCAATCAGCAGCACTGAATTTGCTGTGCGCTTGAACTACAAACCTT
TTGTTCGTTGGTTATGGTTTGGAGCAATATTCATGATGGTCGGTGGTTTCTTTGCCGCATCGGATAAACGCTATCGCTCA
AAAGTGGCCGCTACGGTTAAGCCACAAGCTGAAAAAGCGAAATTAGCTACCGCGCAATAA

Upstream 100 bases:

>100_bases
CTAAAATGAACCAAATTTCGTGCATTTGTGTGAACAGCATGTTGTGCGTTGGTCTAGAGTCTTTCTAAATCAACATATTA
TTAGAGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGGGGAATGTATGAAGAAGTTGGTTCTGTTTATCCCATTAGTCATCTTTCTTGGCATGGGGGTATTTTTATACAAAGGA
TTGTTTTTAAATCCACAGAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNTWVACGIAAAAWIVLATARAAYNIVKPKDGEL
SMARMGRSQLGMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ

Sequences:

>Translated_659_residues
MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNTWVACGIAAAAWIVLATARAAYNIVKPKDGEL
SMARMGRSQLGMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ
>Mature_659_residues
MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEVFTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTVAAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGVGPIIRWKKSKAGELKRQLLVPALVSAAIGIVTPFIVDGAFNTWVACGIAAAAWIVLATARAAYNIVKPKDGEL
SMARMGRSQLGMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKGDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRS
KVAATVKPQAEKAKLATAQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=653, Percent_Identity=49.3108728943338, Blast_Score=599, Evalue=1e-172,
Organism=Escherichia coli, GI1790511, Length=590, Percent_Identity=38.6440677966102, Blast_Score=331, Evalue=8e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72346; Mature: 72346

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
LKRQLLVPALVSAAIGIVTPFIVDGAFNTWVACGIAAAAWIVLATARAAYNIVKPKDGEL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SMARMGRSQLGMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSKVAATVKPQAEKAKLATAQ
CCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCHHHHHCCCCC
>Mature Secondary Structure
MIPELGHFSLIIGVAFAFLLISVPLIGVARKDQYLVRYAWPLTYGMFFFIALSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFALSTWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLALIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALMSGHLDSAWARWSRPWTLAAWIFLTGGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLVCNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEHHCCCCCCEEEECCCCHHHHHHHHHHHH
AAGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHH
LKRQLLVPALVSAAIGIVTPFIVDGAFNTWVACGIAAAAWIVLATARAAYNIVKPKDGEL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SMARMGRSQLGMILAHLGIAVSVIGATMVSNYSIEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKGDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SSTEFAVRLNYKPFVRWLWFGAIFMMVGGFFAASDKRYRSKVAATVKPQAEKAKLATAQ
CCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA