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The map label for this gene is fdhD [H]

Identifier: 113968453

GI number: 113968453

Start: 122191

End: 123027

Strand: Direct

Name: fdhD [H]

Synonym: Shewmr4_0108

Alternate gene names: 113968453

Gene position: 122191-123027 (Clockwise)

Preceding gene: 113968452

Following gene: 113968454

Centisome position: 2.6

GC content: 51.49

Gene sequence:

>837_bases
ATGGAATATCATTCACACGCCGTGGTTACTGAAAGAAAGGTGACCCTTTTAGAACAGGGACAGGCCTCAGAGTTAACCGA
TTATGTGGCTAACGAGGTGCGAGTGGCGCTGGTGTATAACGGCATCGCCCACACTGTGATGCTCGCCAGCCCTGAAAATC
TCGAGGAGTTTGCCATTGGCTTTACCTTGTCGGAGCGGATTGTTTCCCATGTGAATGAAATCAAAGGGGTGGATCTGGAG
TTCACCCCCGAAGGCGTGCTCATTCAGGTGGAAATCACCCAAAGATGCTTTATGGAACTCAAGCAGCAGCGGCGCAATAT
GGCGGGGCGCACGGGCTGTGGACTCTGTGGTGTGGCGCAGCTAGAAGAGGCGGTTAAACCCGTTATTCGCGTCGACTCGG
ACGCCAGATTTAATATCGATCATCTGCAGCTCGCCCTTGAGCAGATCAAAGAGAATCAACATCACTTTAAGCTCACGGGT
GCAACCCACGCCGCCATGGGTTTAGACGAGGAAGGACAAATCATCGCCGCCTTTGAGGACATAGGGCGGCACATTGCACT
GGATAAATTAATCGGTGGATTTTCAATGCGTCAGGCACAGCGACCTGTCGCCGTGTTGCTCACCAGCCGCGCCAGTTTTG
AAATGGTGCAAAAGGCCGCCAGTGCCAATATCCAAATTCTGTTTGCTATGTCCGCCGTGACTTCACTGGCGTTGGAATTA
GCAGAGAAAAGCAACATCACGCTTATCGGTTTTTGTCGTAATGGCAGAGCCACGCTCTACACCCATAGTTATCGACTGTT
GGGGATAAATCGTGGCTGTTTAGCGAAAGCCATCTAA

Upstream 100 bases:

>100_bases
TCAAGCGCATTCGTATTTCGTTAGTCGCTTTGTGACTTGAGTCGAACTTTACTGGCAAACCAATTGTTTTTATTTGAATT
AATGAGTTTAGAGGGTCGCT

Downstream 100 bases:

>100_bases
AGCGTGTCGCCACACAATTAAGATTCTTTAGCACCTTATTTTTAAGGGATTCTGCCTTGCTTGTGTGGCAACAGGTATAA
GCCTTGTGCTTATTTTTTTA

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDEEGQIIAAFEDIGRHIALDKLIGGFSMRQAQRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLLGINRGCLAKAI

Sequences:

>Translated_278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDEEGQIIAAFEDIGRHIALDKLIGGFSMRQAQRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLLGINRGCLAKAI
>Mature_278_residues
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIGFTLSERIVSHVNEIKGVDLE
FTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQLEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTG
ATHAAMGLDEEGQIIAAFEDIGRHIALDKLIGGFSMRQAQRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
AEKSNITLIGFCRNGRATLYTHSYRLLGINRGCLAKAI

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=245, Percent_Identity=50.6122448979592, Blast_Score=246, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30675; Mature: 30675

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIG
CCCCCCEEEEHHHHHEECCCCHHHHHHHHHHHEEEEEEECCHHHEEEEECCCCHHHHHHH
FTLSERIVSHVNEIKGVDLEFTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQ
HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTGATHAAMGLDEEGQIIAAFED
HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEHHH
IGRHIALDKLIGGFSMRQAQRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
HCHHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
AEKSNITLIGFCRNGRATLYTHSYRLLGINRGCLAKAI
HHCCCEEEEEEECCCCEEEEEEEEEEEEECCCHHHCCC
>Mature Secondary Structure
MEYHSHAVVTERKVTLLEQGQASELTDYVANEVRVALVYNGIAHTVMLASPENLEEFAIG
CCCCCCEEEEHHHHHEECCCCHHHHHHHHHHHEEEEEEECCHHHEEEEECCCCHHHHHHH
FTLSERIVSHVNEIKGVDLEFTPEGVLIQVEITQRCFMELKQQRRNMAGRTGCGLCGVAQ
HHHHHHHHHHHHHHCCCCEEECCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
LEEAVKPVIRVDSDARFNIDHLQLALEQIKENQHHFKLTGATHAAMGLDEEGQIIAAFED
HHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCCEEEEHHH
IGRHIALDKLIGGFSMRQAQRPVAVLLTSRASFEMVQKAASANIQILFAMSAVTSLALEL
HCHHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHH
AEKSNITLIGFCRNGRATLYTHSYRLLGINRGCLAKAI
HHCCCEEEEEEECCCCEEEEEEEEEEEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]