Definition Shewanella sp. MR-4 chromosome, complete genome.
Accession NC_008321
Length 4,706,287

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The map label for this gene is ytrB [H]

Identifier: 113968421

GI number: 113968421

Start: 87414

End: 88277

Strand: Direct

Name: ytrB [H]

Synonym: Shewmr4_0076

Alternate gene names: 113968421

Gene position: 87414-88277 (Clockwise)

Preceding gene: 113968420

Following gene: 113968422

Centisome position: 1.86

GC content: 53.82

Gene sequence:

>864_bases
ATGGACCAAGACTGTACCCCAATACTAGAGTTTTCTAACGTAAACAAAGTGTTTCGTGGCAAAGGTGCCAGCGAAAAACG
TGCGCTCAAGGATCTGACCTTACGTTTATCGGCCGGTATGGTGGTCGGTCTATTGGGACAAAACGGTGCGGGTAAATCGA
CCCTAATGCGCTGCGCCTTGGGGATCCTCTCGCCGGATTCGGGCGAAATCTGCACCTTAGGCGAAACGCCGGAGCAGCTT
TCTTCTGCCGCTAAGGAACGCTTAGGCTATGTTCCGCAGCAACCTTTTGGTTATGAAGGCTTTACCGTCGAGCGCGCCCT
CGATTTGCACCGCAGTTTTTATCCCCACTGGGACATGCAGTTAGAGCAGGATTGGCTCACCCGCTTCGAATTAGATGTCA
CTCAACAGGTACAACGCCTGTCCGTTGGTCAGCGCCAATCCTTGGCCTTGATCATGGCGATGGCCTATCGCCCCGAGTTG
CTGATCCTCGATGAACCCGTGGCTAGCCTCGACCCGATAGTCAGACGCAAGTTTATGGTCGATTTGTTCGACTTAGCCCT
CGAATCCGGCTCGGCCGTGTTGTTTTCATCCCATATCACCTCAGATTTAGAACGGGTCGCGAGCCATGTCGCCCTGATTA
AACAGGGCGAGTTAGTGCTGTTTAAGGAGATAGATGCCCTGCGGGAAGAGGTGCGTTTAGTCAAACTCGCGGAGGGCGCC
GAGTTACCTGAGCAGGTGCGTATCCTCAGCCGCGATGGCGATTCTGTACTGGTGGATAGGGGCGATGTGGAGCTTAATTT
GCGCGGCGTGCAGCGCAGCGAAGCGCTGAATTTAGAACAACTCTTTGTGGAGCTGCACAAATGA

Upstream 100 bases:

>100_bases
CAGCTGGGCGTGAGTTTGCCCGAGTTACTGCAATTGATTAATGAGCGTTGGTAGCCTGAGTCGAGCTAAGTGAAAACGAG
AATAAAAAGGACGCAATTCG

Downstream 100 bases:

>100_bases
GTGCCGCGAAACCCATAGCAGAATCAACGACCCGCATCGGTACTAGCCATTCGCTCAATCCCTTTAACGGTATGCTGCGC
CTGTGGTTTTTTGATGTGGG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MDQDCTPILEFSNVNKVFRGKGASEKRALKDLTLRLSAGMVVGLLGQNGAGKSTLMRCALGILSPDSGEICTLGETPEQL
SSAAKERLGYVPQQPFGYEGFTVERALDLHRSFYPHWDMQLEQDWLTRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDLERVASHVALIKQGELVLFKEIDALREEVRLVKLAEGA
ELPEQVRILSRDGDSVLVDRGDVELNLRGVQRSEALNLEQLFVELHK

Sequences:

>Translated_287_residues
MDQDCTPILEFSNVNKVFRGKGASEKRALKDLTLRLSAGMVVGLLGQNGAGKSTLMRCALGILSPDSGEICTLGETPEQL
SSAAKERLGYVPQQPFGYEGFTVERALDLHRSFYPHWDMQLEQDWLTRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDLERVASHVALIKQGELVLFKEIDALREEVRLVKLAEGA
ELPEQVRILSRDGDSVLVDRGDVELNLRGVQRSEALNLEQLFVELHK
>Mature_287_residues
MDQDCTPILEFSNVNKVFRGKGASEKRALKDLTLRLSAGMVVGLLGQNGAGKSTLMRCALGILSPDSGEICTLGETPEQL
SSAAKERLGYVPQQPFGYEGFTVERALDLHRSFYPHWDMQLEQDWLTRFELDVTQQVQRLSVGQRQSLALIMAMAYRPEL
LILDEPVASLDPIVRRKFMVDLFDLALESGSAVLFSSHITSDLERVASHVALIKQGELVLFKEIDALREEVRLVKLAEGA
ELPEQVRILSRDGDSVLVDRGDVELNLRGVQRSEALNLEQLFVELHK

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=29.4930875576037, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=29.4930875576037, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=29.8642533936652, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI45446740, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI47078218, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=29.2792792792793, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI105990541, Length=223, Percent_Identity=28.2511210762332, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI27477115, Length=240, Percent_Identity=28.75, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI116734710, Length=231, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=25.3333333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=25.3333333333333, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI27436953, Length=239, Percent_Identity=25.5230125523013, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI6005701, Length=238, Percent_Identity=25.6302521008403, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI171184400, Length=232, Percent_Identity=26.2931034482759, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87081782, Length=230, Percent_Identity=33.0434782608696, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI48994943, Length=197, Percent_Identity=30.4568527918782, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786319, Length=318, Percent_Identity=28.9308176100629, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87081791, Length=288, Percent_Identity=27.0833333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=28.1385281385281, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI48995001, Length=263, Percent_Identity=28.8973384030418, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788165, Length=198, Percent_Identity=34.3434343434343, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=29.1479820627803, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788472, Length=233, Percent_Identity=29.6137339055794, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788450, Length=235, Percent_Identity=27.2340425531915, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=28, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789991, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=220, Percent_Identity=27.7272727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=28.2511210762332, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788897, Length=231, Percent_Identity=31.6017316017316, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI145693107, Length=236, Percent_Identity=27.5423728813559, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=236, Percent_Identity=30.5084745762712, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790190, Length=254, Percent_Identity=24.4094488188976, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1790739, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786698, Length=207, Percent_Identity=28.5024154589372, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790162, Length=223, Percent_Identity=30.0448430493274, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788210, Length=232, Percent_Identity=26.7241379310345, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790525, Length=262, Percent_Identity=25.1908396946565, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786345, Length=222, Percent_Identity=30.6306306306306, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789962, Length=232, Percent_Identity=28.0172413793103, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789751, Length=183, Percent_Identity=32.2404371584699, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=219, Percent_Identity=28.310502283105, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786803, Length=212, Percent_Identity=27.8301886792453, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=27.3913043478261, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786563, Length=202, Percent_Identity=27.7227722772277, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789032, Length=212, Percent_Identity=25, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI2367384, Length=244, Percent_Identity=29.9180327868852, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=26.4957264957265, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=28.3261802575107, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789672, Length=230, Percent_Identity=24.7826086956522, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788540, Length=205, Percent_Identity=30.7317073170732, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787500, Length=208, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=25.8706467661692, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787041, Length=220, Percent_Identity=26.8181818181818, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=29.4392523364486, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=29.4392523364486, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=29.4392523364486, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=199, Percent_Identity=27.6381909547739, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71988343, Length=226, Percent_Identity=29.646017699115, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17510237, Length=219, Percent_Identity=26.9406392694064, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=26.9607843137255, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=234, Percent_Identity=21.7948717948718, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24650853, Length=250, Percent_Identity=28.8, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24650855, Length=250, Percent_Identity=28.8, Blast_Score=100, Evalue=1e-21,
Organism=Drosophila melanogaster, GI281362751, Length=250, Percent_Identity=28.8, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24582014, Length=207, Percent_Identity=30.9178743961353, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24582012, Length=207, Percent_Identity=30.9178743961353, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI85725262, Length=216, Percent_Identity=29.6296296296296, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666092, Length=260, Percent_Identity=25, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28574150, Length=219, Percent_Identity=28.7671232876712, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI116007328, Length=219, Percent_Identity=28.7671232876712, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648314, Length=209, Percent_Identity=23.9234449760766, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=233, Percent_Identity=24.4635193133047, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573573, Length=228, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573571, Length=228, Percent_Identity=25, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 32061; Mature: 32061

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MDQDCTPILEFSNVNKVFRGKGASEKRALKDLTLRLSAGMVVGLLGQNGAGKSTLMRCAL
CCCCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
GILSPDSGEICTLGETPEQLSSAAKERLGYVPQQPFGYEGFTVERALDLHRSFYPHWDMQ
HHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LEQDWLTRFELDVTQQVQRLSVGQRQSLALIMAMAYRPELLILDEPVASLDPIVRRKFMV
ECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHH
DLFDLALESGSAVLFSSHITSDLERVASHVALIKQGELVLFKEIDALREEVRLVKLAEGA
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCC
ELPEQVRILSRDGDSVLVDRGDVELNLRGVQRSEALNLEQLFVELHK
CCHHHHHHHHCCCCEEEEECCCEEEEEECCCHHHHCCHHHHHHHHCC
>Mature Secondary Structure
MDQDCTPILEFSNVNKVFRGKGASEKRALKDLTLRLSAGMVVGLLGQNGAGKSTLMRCAL
CCCCCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
GILSPDSGEICTLGETPEQLSSAAKERLGYVPQQPFGYEGFTVERALDLHRSFYPHWDMQ
HHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCE
LEQDWLTRFELDVTQQVQRLSVGQRQSLALIMAMAYRPELLILDEPVASLDPIVRRKFMV
ECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHH
DLFDLALESGSAVLFSSHITSDLERVASHVALIKQGELVLFKEIDALREEVRLVKLAEGA
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCC
ELPEQVRILSRDGDSVLVDRGDVELNLRGVQRSEALNLEQLFVELHK
CCHHHHHHHHCCCCEEEEECCCEEEEEECCCHHHHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]