Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478349

Identifier: 113478349

GI number: 113478349

Start: 7681269

End: 7681541

Strand: Reverse

Name: 113478349

Synonym: Tery_5025

Alternate gene names: NA

Gene position: 7681541-7681269 (Counterclockwise)

Preceding gene: 113478355

Following gene: 113478346

Centisome position: 99.12

GC content: 33.7

Gene sequence:

>273_bases
ATGAAAATTGATATTGATATAATGACTCGCTATTTACACAGAATGCGTAATCAACCAGGATGGGATTTTCTCAATGAGGT
TGCTACATCTTTAAATATGGATAGAGCTACATCTAGGCGCTACACAAAAACAGCAGAAGAATGGGAATTAATTGAGCGTC
AACAGTTAGAAAATCAACCAACTCAAATTCAAGCAAGTCATAAATTAATGAAATTAGAGCCTGGAGAAGTTAGAAAAATT
GTACAGGCAAATTGTCAGGAATTTCAGTTTTAA

Upstream 100 bases:

>100_bases
AAAACTCATTCAGATATTACTTTTAACTTGTGACTTATAACTTTTGACTTGTACACGGCGCTATAATTTTAATGATCAAA
AATAATCAGGAAAATAGACT

Downstream 100 bases:

>100_bases
AGGTTGATATTTTACTGATAAAAATGGGCTCATATTGAGAAGATATTTAATCTGATAATTGCAGAACAGAAGCAACAGAT
ATTTATTATACTAAATGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MKIDIDIMTRYLHRMRNQPGWDFLNEVATSLNMDRATSRRYTKTAEEWELIERQQLENQPTQIQASHKLMKLEPGEVRKI
VQANCQEFQF

Sequences:

>Translated_90_residues
MKIDIDIMTRYLHRMRNQPGWDFLNEVATSLNMDRATSRRYTKTAEEWELIERQQLENQPTQIQASHKLMKLEPGEVRKI
VQANCQEFQF
>Mature_90_residues
MKIDIDIMTRYLHRMRNQPGWDFLNEVATSLNMDRATSRRYTKTAEEWELIERQQLENQPTQIQASHKLMKLEPGEVRKI
VQANCQEFQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10826; Mature: 10826

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDIDIMTRYLHRMRNQPGWDFLNEVATSLNMDRATSRRYTKTAEEWELIERQQLENQP
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TQIQASHKLMKLEPGEVRKIVQANCQEFQF
CEEHHHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIDIDIMTRYLHRMRNQPGWDFLNEVATSLNMDRATSRRYTKTAEEWELIERQQLENQP
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
TQIQASHKLMKLEPGEVRKIVQANCQEFQF
CEEHHHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA