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The map label for this gene is ykfC [C]

Identifier: 113478103

GI number: 113478103

Start: 7258754

End: 7260103

Strand: Reverse

Name: ykfC [C]

Synonym: Tery_4730

Alternate gene names: 113478103

Gene position: 7260103-7258754 (Counterclockwise)

Preceding gene: 113478104

Following gene: 113478102

Centisome position: 93.68

GC content: 34.74

Gene sequence:

>1350_bases
ATGTCTAATACGAGTTTAAAGACTACGGGGGAATGGAAAGAGTGGCGTGAGATTAATTGGACAAAAGTTGAGCGTCGGGT
CTTCAAGTTACAGAAAAGAATCTACAGAGCCTCTCAACGTGGTGATGTTATTGCAGTTCGTAAGCTCCAAAAAATGCTGA
TAAAATCTTGGTATGGGAGGTTGTTGGCGGTGCGTAGGTTTAGTCAAATTAACCAGGGTGAGAAAATAATAGAAGTTGGT
GGTGTTCAATTATTGTCTCCAGACAAATGTTTTGCCTTGGCTAAAAGATTAAAACTAAATAGCAAAGTTAAACCAATGAT
AAGTACTGTTAAGGACCAACCCTTGCAAATACTTGTCAAGATGTCTCTAGAGAACCAATGGGAAGCAAAGTTTGAACTTT
CTTCTTATGGGTTTAAGCTACCGAAGTCATGTCAGGACGCTATGAAAGCAATTGTTAATTGTGTTAAGTTTCATCCGAAA
TATTTACTGAAAGCTGATATAAGTCAATGCTTTAAGTGTTTTGATCATGAACAACTATTAAAAAAATTAGATACCTATCC
CACTTTACGCAAACAAATTCGAGTTTGGTTAAAAGATGGTTTGATCAATGGTAAAGACTTGTTTAAATGGGAGGAAGTCA
TTTCTCCACTACTGGCAAATATAGCTTTCCATGATACAGAAGAAAAAATCAAACATTACACTAAAGCACTGAGTGATCAA
TGTGAAGGTTTAAGTTTGATTCGTTATGGAGGTAACTTGGTGATCGCTCACAAAAATATTGAGGTAGTTCAAAAATGCCA
ATATATAATTAGAGAGTGCTTATCTGACTTATGTTTGGAATTAAAACCTAGTCAAATTATTATTTATCACACACTATATA
GGTGTGGTGAAGAAGAACCTGGATTTGATTTCTTGGGGTTTAATATTAGACAACATAAGGTTAGTAAAAACCAAAGTAAG
CTGGGTTTTAAAACCAAAATCAAACCAAGTACGGGGATGATCAGAAGTCATTATTGTCACATTGCTGAGGTGATAGATAA
ATATAAGTCTGCATCACAAGCTGTCTTAATCAGAAAACTCAACCCTATTGTTAAAAGTTGGGTAAACTATTACTCGAAAT
TATTTGTGAGTAAGAAAATTTTCCAGGATTTGGATAATTTAATATTCCAAAAACTCTGGGGTTGGGCAAAAAGAAGACAC
CCTAATCAAAATAATCATTGGATTTATCAAAAATATTGGCAAAGTATTGGGGAAAACAAGAGAGAATTTTTTGGTAGTGA
CAAGAATGGCAGTCAAGTTAGATTATTGAGGCACGCAAACTTGATTTATTGGAGCATAGAATTGGCATAG

Upstream 100 bases:

>100_bases
GGAGGGATTGTGTCACAAGCAAAAGCCCTTTGTTAATTTAATGGGATATGCAGACGGACACACGGTGATTTGGAATGTAG
AGTTTGAGTAAGTAATATAA

Downstream 100 bases:

>100_bases
CAGAAGTCAGAAATAAAATTCTTACTGTGAATAAATTTGAGAGTGTGAGAATTTCCTAAGTTCCCTGATGACTGCTATAA
AAAGACAAAGTGCTAACTGC

Product: hypothetical protein

Products: NA

Alternate protein names: Reverse Transcriptase; Group II Intron Maturase-Specific Domain Family; Group II Intron Maturase-Specific; Maturase; Reverse Transcriptase/Endonuclease Protein; Group II Intron Encoded Reverse Transcriptase; Retron-Type Reverse Transcriptase; Group II Intron-Encoding Maturase; Reverse Transcriptase-Like Protein; Group II Intron Reverse Transcriptase/Maturase; Group II Intron Maturase-Specific Domain Protein; Reverse Transcriptase/Maturase Protein; Reverse Transcriptase/Maturase-Like Protein; Group II Intron-Associated Open Reading Frame; Group II Intron/Maturase; Reverse Transcriptase Interruption-C; Reverse Transcriptase Domain Protein

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSNTSLKTTGEWKEWREINWTKVERRVFKLQKRIYRASQRGDVIAVRKLQKMLIKSWYGRLLAVRRFSQINQGEKIIEVG
GVQLLSPDKCFALAKRLKLNSKVKPMISTVKDQPLQILVKMSLENQWEAKFELSSYGFKLPKSCQDAMKAIVNCVKFHPK
YLLKADISQCFKCFDHEQLLKKLDTYPTLRKQIRVWLKDGLINGKDLFKWEEVISPLLANIAFHDTEEKIKHYTKALSDQ
CEGLSLIRYGGNLVIAHKNIEVVQKCQYIIRECLSDLCLELKPSQIIIYHTLYRCGEEEPGFDFLGFNIRQHKVSKNQSK
LGFKTKIKPSTGMIRSHYCHIAEVIDKYKSASQAVLIRKLNPIVKSWVNYYSKLFVSKKIFQDLDNLIFQKLWGWAKRRH
PNQNNHWIYQKYWQSIGENKREFFGSDKNGSQVRLLRHANLIYWSIELA

Sequences:

>Translated_449_residues
MSNTSLKTTGEWKEWREINWTKVERRVFKLQKRIYRASQRGDVIAVRKLQKMLIKSWYGRLLAVRRFSQINQGEKIIEVG
GVQLLSPDKCFALAKRLKLNSKVKPMISTVKDQPLQILVKMSLENQWEAKFELSSYGFKLPKSCQDAMKAIVNCVKFHPK
YLLKADISQCFKCFDHEQLLKKLDTYPTLRKQIRVWLKDGLINGKDLFKWEEVISPLLANIAFHDTEEKIKHYTKALSDQ
CEGLSLIRYGGNLVIAHKNIEVVQKCQYIIRECLSDLCLELKPSQIIIYHTLYRCGEEEPGFDFLGFNIRQHKVSKNQSK
LGFKTKIKPSTGMIRSHYCHIAEVIDKYKSASQAVLIRKLNPIVKSWVNYYSKLFVSKKIFQDLDNLIFQKLWGWAKRRH
PNQNNHWIYQKYWQSIGENKREFFGSDKNGSQVRLLRHANLIYWSIELA
>Mature_448_residues
SNTSLKTTGEWKEWREINWTKVERRVFKLQKRIYRASQRGDVIAVRKLQKMLIKSWYGRLLAVRRFSQINQGEKIIEVGG
VQLLSPDKCFALAKRLKLNSKVKPMISTVKDQPLQILVKMSLENQWEAKFELSSYGFKLPKSCQDAMKAIVNCVKFHPKY
LLKADISQCFKCFDHEQLLKKLDTYPTLRKQIRVWLKDGLINGKDLFKWEEVISPLLANIAFHDTEEKIKHYTKALSDQC
EGLSLIRYGGNLVIAHKNIEVVQKCQYIIRECLSDLCLELKPSQIIIYHTLYRCGEEEPGFDFLGFNIRQHKVSKNQSKL
GFKTKIKPSTGMIRSHYCHIAEVIDKYKSASQAVLIRKLNPIVKSWVNYYSKLFVSKKIFQDLDNLIFQKLWGWAKRRHP
NQNNHWIYQKYWQSIGENKREFFGSDKNGSQVRLLRHANLIYWSIELA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52783; Mature: 52652

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTSLKTTGEWKEWREINWTKVERRVFKLQKRIYRASQRGDVIAVRKLQKMLIKSWYGR
CCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLAVRRFSQINQGEKIIEVGGVQLLSPDKCFALAKRLKLNSKVKPMISTVKDQPLQILVK
HHHHHHHHHCCCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
MSLENQWEAKFELSSYGFKLPKSCQDAMKAIVNCVKFHPKYLLKADISQCFKCFDHEQLL
HHCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHH
KKLDTYPTLRKQIRVWLKDGLINGKDLFKWEEVISPLLANIAFHDTEEKIKHYTKALSDQ
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
CEGLSLIRYGGNLVIAHKNIEVVQKCQYIIRECLSDLCLELKPSQIIIYHTLYRCGEEEP
CCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
GFDFLGFNIRQHKVSKNQSKLGFKTKIKPSTGMIRSHYCHIAEVIDKYKSASQAVLIRKL
CCCEECCCHHHHHHCCCCHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
NPIVKSWVNYYSKLFVSKKIFQDLDNLIFQKLWGWAKRRHPNQNNHWIYQKYWQSIGENK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH
REFFGSDKNGSQVRLLRHANLIYWSIELA
HHHCCCCCCCCEEEEEEECCEEEEEEEEC
>Mature Secondary Structure 
SNTSLKTTGEWKEWREINWTKVERRVFKLQKRIYRASQRGDVIAVRKLQKMLIKSWYGR
CCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLAVRRFSQINQGEKIIEVGGVQLLSPDKCFALAKRLKLNSKVKPMISTVKDQPLQILVK
HHHHHHHHHCCCCCCEEEECCEEEECCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
MSLENQWEAKFELSSYGFKLPKSCQDAMKAIVNCVKFHPKYLLKADISQCFKCFDHEQLL
HHCCCCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHH
KKLDTYPTLRKQIRVWLKDGLINGKDLFKWEEVISPLLANIAFHDTEEKIKHYTKALSDQ
HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
CEGLSLIRYGGNLVIAHKNIEVVQKCQYIIRECLSDLCLELKPSQIIIYHTLYRCGEEEP
CCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCC
GFDFLGFNIRQHKVSKNQSKLGFKTKIKPSTGMIRSHYCHIAEVIDKYKSASQAVLIRKL
CCCEECCCHHHHHHCCCCHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
NPIVKSWVNYYSKLFVSKKIFQDLDNLIFQKLWGWAKRRHPNQNNHWIYQKYWQSIGENK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCH
REFFGSDKNGSQVRLLRHANLIYWSIELA
HHHCCCCCCCCEEEEEEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA