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The map label for this gene is rbpA [H]

Identifier: 113478076

GI number: 113478076

Start: 7224827

End: 7225120

Strand: Reverse

Name: rbpA [H]

Synonym: Tery_4701

Alternate gene names: 113478076

Gene position: 7225120-7224827 (Counterclockwise)

Preceding gene: 113478077

Following gene: 113478075

Centisome position: 93.23

GC content: 42.52

Gene sequence:

>294_bases
ATGTCAATTTATGTAGGTAACTTATCCTACGATGTCACACAAGAGGACTTATCTGAGGTTTTTGCAGAATATGGTACTGT
CAAGAGGGTTCAGTTACCAACTGATCGAGAAACAGGACGTCCCCGTGGCTTTGGATTTGTAGAAATGAGCAGTGAAGAAG
AAGAACAGAAAGCTATTGATGCACTTGATAGTGCTGAATGGATGGGTCGTGATATAAAGGTTAATAAGGCTAAGCCTCGT
GAAGAACGTAAACCAAGCAATCGAAGGGATCCCGGTGCCGGTGGAAGATATTAA

Upstream 100 bases:

>100_bases
ATAATGTTTGTTCATATTGAGGGTTACTGTCCTGTCGTTATTGACAAGCTTCTCTCCGAAGTCTAAATCTCTACACATCT
CTAAATTTGGGAGAAAATCT

Downstream 100 bases:

>100_bases
GCCATTTATTCTGTGAATATAAAGTACTGATACTACCTTAGCAGTGAGTGTTAAGCATCTGGCTGATAAGGTTTATAGTT
TTGTAGCCAAAGTTAGTAAC

Product: RNA-binding region RNP-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDALDSAEWMGRDIKVNKAKPR
EERKPSNRRDPGAGGRY

Sequences:

>Translated_97_residues
MSIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDALDSAEWMGRDIKVNKAKPR
EERKPSNRRDPGAGGRY
>Mature_96_residues
SIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAIDALDSAEWMGRDIKVNKAKPRE
ERKPSNRRDPGAGGRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI14149675, Length=86, Percent_Identity=40.6976744186046, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI4557493, Length=76, Percent_Identity=40.7894736842105, Blast_Score=70, Evalue=3e-13,
Organism=Homo sapiens, GI5174637, Length=86, Percent_Identity=39.5348837209302, Blast_Score=69, Evalue=5e-13,
Organism=Homo sapiens, GI45439316, Length=86, Percent_Identity=39.5348837209302, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI303305009, Length=86, Percent_Identity=39.5348837209302, Blast_Score=69, Evalue=7e-13,
Organism=Homo sapiens, GI4757926, Length=82, Percent_Identity=36.5853658536585, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI35493811, Length=82, Percent_Identity=36.5853658536585, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI4502847, Length=91, Percent_Identity=34.0659340659341, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=42.6829268292683, Blast_Score=82, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=46.1538461538462, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=42.3076923076923, Blast_Score=79, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17539498, Length=78, Percent_Identity=41.025641025641, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=38.1578947368421, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115532084, Length=82, Percent_Identity=41.4634146341463, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17505625, Length=84, Percent_Identity=40.4761904761905, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71999552, Length=82, Percent_Identity=41.4634146341463, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71999554, Length=82, Percent_Identity=41.4634146341463, Blast_Score=63, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321599, Length=79, Percent_Identity=36.7088607594937, Blast_Score=67, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6324324, Length=86, Percent_Identity=43.0232558139535, Blast_Score=64, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322191, Length=77, Percent_Identity=38.961038961039, Blast_Score=63, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17647301, Length=78, Percent_Identity=42.3076923076923, Blast_Score=72, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17137710, Length=76, Percent_Identity=42.1052631578947, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=35, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 11030; Mature: 10899

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAID
CEEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHH
ALDSAEWMGRDIKVNKAKPREERKPSNRRDPGAGGRY
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAID
EEEECCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHH
ALDSAEWMGRDIKVNKAKPREERKPSNRRDPGAGGRY
HHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8704138; 8590279; 8905231 [H]