Click here to switch to the map view.

The map label for this gene is psbB [H]

Identifier: 113478046

GI number: 113478046

Start: 7173887

End: 7175413

Strand: Reverse

Name: psbB [H]

Synonym: Tery_4666

Alternate gene names: 113478046

Gene position: 7175413-7173887 (Counterclockwise)

Preceding gene: 113478048

Following gene: 113478045

Centisome position: 92.58

GC content: 43.22

Gene sequence:

>1527_bases
ATGGGATTACCTTGGTATCGTGTACATACAGTTGTTCTGAATGATCCAGGACGACTAATATCCGTGCATTTAATGCACAC
TGCTCTTGTAGCAGGTTGGGCCGGATCAATGGCCCTTTATGAACTGGCAATCTTTGATCCTAGCGATCCAGTGCTAAACC
CTATGTGGCGTCAGGGAATGTTTGTTATGCCATTCATGGCCCGTCTAGGTGTTACCCAATCTTGGGGTGGTTGGAGTGTT
ACAGGAGAAGTAGCTTCAAACCCTGGTTTCTGGTCTTTTGAAGGTGTAGCAGCAGCTCATATCGTTCTTTCTGGTTTGCT
ATTCCTAGCTGCTGTATGGCATTGGGTTTTCTGGGATTTAGATTTATTCTTTGACCAACGTACAGGAGATCCTGCTCTAG
ACCTGCCAAAAATGTTTGGCATTCACTTATTCTTATCTGGTTTACTTTGCTTTGGCTTTGGGGCCTTCCATTTGACCGGA
GTATTTGGTCCAGGAATGTGGGTATCAGATCCTTATGGGTTAACAGGCTCGATCCAGCCAGTAGCACCATCATGGGGACC
AGAAGGATTTAACCCATTTAATGCTGGTGGAATTGTTGCTCACCACATTGCTGCTGGAATTGTGGGAATTATTGCTGGTT
TATTCCACTTATCAGTAAGACCGCCAGAACGTCTCTACAGAGCCTTGCGGATGGGTAATATTGAAACAGTTCTTTCCAGT
AGTATTGCAGCAGTTTTCTTTGCAGCTTTTGTTGTAGCTGGTACAATGTGGTATGGCTGTGCAGCTACTCCTATAGAATT
ATTTGGCCCTACTCGTTATCAGTGGGATAATAGTTACTTTCAGCAAGAAATTGATCGTCGTGTTCAAGCTGAAATAGTAG
CAGGAAAAACTCCCTCTGAAGCTTGGTTAACTATCCCCGAAAAATTAGCCTTTTATGACTACGTTGGTAATAGTCCAGCA
AAAGGCGGTCTTTTCCGTGTTGGTCCTATGAATAATGGAGATGGTTTAGCTCAAGCTTGGCTTGGTCATCCTATATTTGA
GGATAGGGATGGTGAAGAATTATTTGTACGTCGCTTACCTAACTTTTTTGAAACTTTCCCAGTAGTTTTGACCAATTCTG
AAGGTGTAGTAAAGGCTGATATTCCTTTTCGTCGTTCAGAGTCAAAATATAGTTTTGAGGAACGGGGGGTAACAGTTAGC
TTCTTGGGTGGTGAACTTGATAGTCAAACCTTTACTAACCCAGCCGATGTTAAAAAGTATGCTCGTAAAGCCCAAACTGG
TGAACCTTTTGAATTTGACCAAGAAACTTTAGGCTCTGATGGTGTGTTCCGAACTAGTACTCGTGGTTGGTTTACTTTTG
GTCATGCTTGTTTTGCTCTCCTATTCTTCTTCGGTCATATTTGGCATGGATGCCGGACCTTATTCCGCGATGTGTTTGCA
GGTATTGACCCAGACCTAGAGGAACAAGTAGAGTTTGGTTTATTCCAAAAACTGGGTGACTTGAGTACCCGTAGGAAGGA
AACATAA

Upstream 100 bases:

>100_bases
ACCGTAGAAGCAGGAAGTAAAAATCAAACAGTTACTTTACTGAACGCTTTGTGTCAGTTTTACAAAGCAGTAGACATCAT
TTCTAGGAGGAGTGTAGTAA

Downstream 100 bases:

>100_bases
CAAACAAAATAAGTACTAAAGTTTGGCTACAAGGCTAAACTACTATCTTTAAATAGTTATCAACTTTTAGGATTTCCGTA
ACGGAATACTATTCATTCAC

Product: photosystem antenna protein-like protein

Products: NA

Alternate protein names: Protein CP-47 [H]

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVMPFMARLGVTQSWGGWSV
TGEVASNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVFWDLDLFFDQRTGDPALDLPKMFGIHLFLSGLLCFGFGAFHLTG
VFGPGMWVSDPYGLTGSIQPVAPSWGPEGFNPFNAGGIVAHHIAAGIVGIIAGLFHLSVRPPERLYRALRMGNIETVLSS
SIAAVFFAAFVVAGTMWYGCAATPIELFGPTRYQWDNSYFQQEIDRRVQAEIVAGKTPSEAWLTIPEKLAFYDYVGNSPA
KGGLFRVGPMNNGDGLAQAWLGHPIFEDRDGEELFVRRLPNFFETFPVVLTNSEGVVKADIPFRRSESKYSFEERGVTVS
FLGGELDSQTFTNPADVKKYARKAQTGEPFEFDQETLGSDGVFRTSTRGWFTFGHACFALLFFFGHIWHGCRTLFRDVFA
GIDPDLEEQVEFGLFQKLGDLSTRRKET

Sequences:

>Translated_508_residues
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVMPFMARLGVTQSWGGWSV
TGEVASNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVFWDLDLFFDQRTGDPALDLPKMFGIHLFLSGLLCFGFGAFHLTG
VFGPGMWVSDPYGLTGSIQPVAPSWGPEGFNPFNAGGIVAHHIAAGIVGIIAGLFHLSVRPPERLYRALRMGNIETVLSS
SIAAVFFAAFVVAGTMWYGCAATPIELFGPTRYQWDNSYFQQEIDRRVQAEIVAGKTPSEAWLTIPEKLAFYDYVGNSPA
KGGLFRVGPMNNGDGLAQAWLGHPIFEDRDGEELFVRRLPNFFETFPVVLTNSEGVVKADIPFRRSESKYSFEERGVTVS
FLGGELDSQTFTNPADVKKYARKAQTGEPFEFDQETLGSDGVFRTSTRGWFTFGHACFALLFFFGHIWHGCRTLFRDVFA
GIDPDLEEQVEFGLFQKLGDLSTRRKET
>Mature_507_residues
GLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGMFVMPFMARLGVTQSWGGWSVT
GEVASNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVFWDLDLFFDQRTGDPALDLPKMFGIHLFLSGLLCFGFGAFHLTGV
FGPGMWVSDPYGLTGSIQPVAPSWGPEGFNPFNAGGIVAHHIAAGIVGIIAGLFHLSVRPPERLYRALRMGNIETVLSSS
IAAVFFAAFVVAGTMWYGCAATPIELFGPTRYQWDNSYFQQEIDRRVQAEIVAGKTPSEAWLTIPEKLAFYDYVGNSPAK
GGLFRVGPMNNGDGLAQAWLGHPIFEDRDGEELFVRRLPNFFETFPVVLTNSEGVVKADIPFRRSESKYSFEERGVTVSF
LGGELDSQTFTNPADVKKYARKAQTGEPFEFDQETLGSDGVFRTSTRGWFTFGHACFALLFFFGHIWHGCRTLFRDVFAG
IDPDLEEQVEFGLFQKLGDLSTRRKET

Specific function: This protein conjugates with chlorophyll and catalyzes the primary light-induced photochemical processes of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR017486 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 56408; Mature: 56277

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHCCE
FVMPFMARLGVTQSWGGWSVTGEVASNPGFWSFEGVAAAHIVLSGLLFLAAVWHWVFWDL
EHHHHHHHCCCCCCCCCEEEECCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
DLFFDQRTGDPALDLPKMFGIHLFLSGLLCFGFGAFHLTGVFGPGMWVSDPYGLTGSIQP
HHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VAPSWGPEGFNPFNAGGIVAHHIAAGIVGIIAGLFHLSVRPPERLYRALRMGNIETVLSS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHH
SIAAVFFAAFVVAGTMWYGCAATPIELFGPTRYQWDNSYFQQEIDRRVQAEIVAGKTPSE
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
AWLTIPEKLAFYDYVGNSPAKGGLFRVGPMNNGDGLAQAWLGHPIFEDRDGEELFVRRLP
CEEECHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHCC
NFFETFPVVLTNSEGVVKADIPFRRSESKYSFEERGVTVSFLGGELDSQTFTNPADVKKY
HHHHCCCEEEECCCCEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCCCCCCCHHHHHHH
ARKAQTGEPFEFDQETLGSDGVFRTSTRGWFTFGHACFALLFFFGHIWHGCRTLFRDVFA
HHHCCCCCCCCCCHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIDPDLEEQVEFGLFQKLGDLSTRRKET
CCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GLPWYRVHTVVLNDPGRLISVHLMHTALVAGWAGSMALYELAIFDPSDPVLNPMWRQGM
CCCEEEEEEEEECCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHCCE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CCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2485088; 11759840 [H]