| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478020
Identifier: 113478020
GI number: 113478020
Start: 7129472
End: 7130017
Strand: Reverse
Name: 113478020
Synonym: Tery_4636
Alternate gene names: NA
Gene position: 7130017-7129472 (Counterclockwise)
Preceding gene: 113478021
Following gene: 113478019
Centisome position: 92.0
GC content: 38.46
Gene sequence:
>546_bases ATGTCAAGATCTAATCTCAGGAATAGGTGTAGACAAAGGCCAACTCTTTTTTTTCTGTTACTACTGATATTTTTCTGCAG TACGAGGTGCGTTTTGGTTGTAGGAAAAATCTCTACTGCCACGACCATTTCACAAATTAATTCTGAGTTAATTAGCAATG TTGATGTAGTTCCCCAACGCCATAGGTTAGGACTATCATTATACTTAGAGAATTGTGCTACTTGTCATGTTGCAGTACCA CCTCAAGTCCTCCCTACAGAAAGTTGGCAAATAATTCTTCGAGATTCTCAACACTACGGTGTACAGTTTCCTAGTCTTAT AGATCCACCCCGTCAACTTATTTGGAATTATTTACAGGTTTCTTCTCGTCGCAAATCTCAGGAAGATGAAAGAATTCCTT ACAGAATTGCTAGTTCCCGTTACTTCAAAGCACTTCATCCTCAACTCCAGCTTCCTCAACAATTAAGTATCAAAGGTTGT ATTTATTGTCATCCCAAAGTCAAAGATTTTGACTTTCGGACTCTTAACCCTGTAAGGCCAGAATAA
Upstream 100 bases:
>100_bases CAATATTCTCTAATGGGTTAGTAGCAAAAGAGGGTATGACAATTCCAATTCTTTAGTCAGGTTCAAAAAATCGTTTTAAA ATAGCACAGAGATTATATTT
Downstream 100 bases:
>100_bases TATTCAAGTCAGAAGTTAGAGGTTGTTTTTGTTACAGTAATTTTGAGCAACCCTTGAAAAATATTTCATCTTCAAAGGTG AGGTTAGGGGACCAAATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MSRSNLRNRCRQRPTLFFLLLLIFFCSTRCVLVVGKISTATTISQINSELISNVDVVPQRHRLGLSLYLENCATCHVAVP PQVLPTESWQIILRDSQHYGVQFPSLIDPPRQLIWNYLQVSSRRKSQEDERIPYRIASSRYFKALHPQLQLPQQLSIKGC IYCHPKVKDFDFRTLNPVRPE
Sequences:
>Translated_181_residues MSRSNLRNRCRQRPTLFFLLLLIFFCSTRCVLVVGKISTATTISQINSELISNVDVVPQRHRLGLSLYLENCATCHVAVP PQVLPTESWQIILRDSQHYGVQFPSLIDPPRQLIWNYLQVSSRRKSQEDERIPYRIASSRYFKALHPQLQLPQQLSIKGC IYCHPKVKDFDFRTLNPVRPE >Mature_180_residues SRSNLRNRCRQRPTLFFLLLLIFFCSTRCVLVVGKISTATTISQINSELISNVDVVPQRHRLGLSLYLENCATCHVAVPP QVLPTESWQIILRDSQHYGVQFPSLIDPPRQLIWNYLQVSSRRKSQEDERIPYRIASSRYFKALHPQLQLPQQLSIKGCI YCHPKVKDFDFRTLNPVRPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21050; Mature: 20919
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRSNLRNRCRQRPTLFFLLLLIFFCSTRCVLVVGKISTATTISQINSELISNVDVVPQR CCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCH HRLGLSLYLENCATCHVAVPPQVLPTESWQIILRDSQHYGVQFPSLIDPPRQLIWNYLQV HHCCHHEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH SSRRKSQEDERIPYRIASSRYFKALHPQLQLPQQLSIKGCIYCHPKVKDFDFRTLNPVRP HHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC E C >Mature Secondary Structure SRSNLRNRCRQRPTLFFLLLLIFFCSTRCVLVVGKISTATTISQINSELISNVDVVPQR CCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCH HRLGLSLYLENCATCHVAVPPQVLPTESWQIILRDSQHYGVQFPSLIDPPRQLIWNYLQV HHCCHHEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH SSRRKSQEDERIPYRIASSRYFKALHPQLQLPQQLSIKGCIYCHPKVKDFDFRTLNPVRP HHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA