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The map label for this gene is ykfA [H]

Identifier: 113478016

GI number: 113478016

Start: 7120340

End: 7120807

Strand: Reverse

Name: ykfA [H]

Synonym: Tery_4632

Alternate gene names: 113478016

Gene position: 7120807-7120340 (Counterclockwise)

Preceding gene: 113478017

Following gene: 113478015

Centisome position: 91.88

GC content: 34.83

Gene sequence:

>468_bases
ATGCTGAAAGCAACCCGCTTTAAAGTTGGTGATACCGTAGCATTAGTTAGTTTTACCAGCATAGCTTTTAAACACGAACT
TAAATATATAAACTTGATTTTAAGTAAACAAAAATTAAAAGTCAAAGTTGCTACCCATACTCTCGATAAATATGGATATT
TAGCAGGTAAGGATATAGACTGTGCAGCAGATATTAATACTATGTTTGCGGATGAGGAGGTCAAAGCATTGATAACAAGC
AGAAGTGGTTGGGGTAGCAGTCGTATCTTATCATTATTAAACTATAACTTAATTCGGAAAAATCCTAAAATTATCATCGA
CTACAGCGATATTACTGCTCTATTATTGGCAATATATCCTGGCAGTGGTCTGGTGACATTTCACGGTTCCTCTGCTACAT
CTATCTGGAATAAATTTTCTGTTGCTTATCTCAAAGATATACTGTTTGAAGAAAAAGCGATGAGCTGA

Upstream 100 bases:

>100_bases
TTACTTTTTAAAATTTCTAGGTCTAAGTTTATTGACGACCAAAGTTACTGCTATAAATAACCATTTCCAAATCATTATAT
CAGCAGTATCGCCTTTACCC

Downstream 100 bases:

>100_bases
CAACCTCCTAGAAATATTGCGGAAACTATCACAGATGGAAAAGGAAGGGGTCGACTACTGGGGGGAAACTTGTCTGTGTT
AGCAGGGATGATGGGCTCGA

Product: peptidase U61, LD-carboxypeptidase A

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MLKATRFKVGDTVALVSFTSIAFKHELKYINLILSKQKLKVKVATHTLDKYGYLAGKDIDCAADINTMFADEEVKALITS
RSGWGSSRILSLLNYNLIRKNPKIIIDYSDITALLLAIYPGSGLVTFHGSSATSIWNKFSVAYLKDILFEEKAMS

Sequences:

>Translated_155_residues
MLKATRFKVGDTVALVSFTSIAFKHELKYINLILSKQKLKVKVATHTLDKYGYLAGKDIDCAADINTMFADEEVKALITS
RSGWGSSRILSLLNYNLIRKNPKIIIDYSDITALLLAIYPGSGLVTFHGSSATSIWNKFSVAYLKDILFEEKAMS
>Mature_155_residues
MLKATRFKVGDTVALVSFTSIAFKHELKYINLILSKQKLKVKVATHTLDKYGYLAGKDIDCAADINTMFADEEVKALITS
RSGWGSSRILSLLNYNLIRKNPKIIIDYSDITALLLAIYPGSGLVTFHGSSATSIWNKFSVAYLKDILFEEKAMS

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 17244; Mature: 17244

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKATRFKVGDTVALVSFTSIAFKHELKYINLILSKQKLKVKVATHTLDKYGYLAGKDID
CCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEHHHHCCCCCCCCC
CAADINTMFADEEVKALITSRSGWGSSRILSLLNYNLIRKNPKIIIDYSDITALLLAIYP
CCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHEEEHEEEC
GSGLVTFHGSSATSIWNKFSVAYLKDILFEEKAMS
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLKATRFKVGDTVALVSFTSIAFKHELKYINLILSKQKLKVKVATHTLDKYGYLAGKDID
CCCCCEEECCCEEEEHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEEHHHHCCCCCCCCC
CAADINTMFADEEVKALITSRSGWGSSRILSLLNYNLIRKNPKIIIDYSDITALLLAIYP
CCCCCHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHEEEHEEEC
GSGLVTFHGSSATSIWNKFSVAYLKDILFEEKAMS
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]