| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477999
Identifier: 113477999
GI number: 113477999
Start: 7089972
End: 7091165
Strand: Reverse
Name: 113477999
Synonym: Tery_4613
Alternate gene names: NA
Gene position: 7091165-7089972 (Counterclockwise)
Preceding gene: 113478001
Following gene: 113477998
Centisome position: 91.5
GC content: 44.3
Gene sequence:
>1194_bases ATGTCCTTACCAATACAAACCAAGATGGCCATTGTAGGTGCGGGACCCCATGCCCTAACTTTGGTAACTCATCTGTTGCA AAAACGGAAAAAGTATCACCATAAAATAATAGTATTTGACCCCAGTGCCACTTGGATGAGTCAGTGGCGACAGCAGTTTG CAGCCCAAGAAATACCCCACTTGCGATCCCCCGCCGTTCACCATCCAGACCCAGATCCCTATTCCCTGCGTCGGTTTGCA GAAAATCGCCCAAACGAACTATTCCCCCCCTACGACTTACCTGGAACAAAACTATTTCAAGAATTTTCCCAAGATGTAGT TAGTCGCTGGCAGTTAGAAGACAAAGTATACAAAGCATCAGTGACAAACATTGTTCCCATAACCTACCGAGGGAACCCTC AGTTTCGAGTTGAATTAGATGATGGCAACTCAACCATAGCTGGTCAAGTAATTATGGCCAATGGTGGGGGAAAACCTCAA CTTCCAGAATGGGCGAAAAAAACTCCTACTCCCTATCCAAACCAATGCCTTTGTCACTCCCACCAAGTAGACCTGCGAGG CTTGCGACTCAGAGGTGAAAAAGTGCTAATTATCGGTGGGGGCTTAACTAGCGGTCACTTAGCATTAGGAGCCTTAAAAC GAGGCGCAAATGTAACCTTGATGGTCAGACGTCACCTCAAAGAGAAATTATTTGATGCGGAACCCGGTTGGTTAGGTCCA AAATATTTAAAAGGTTTTAGCGCCGAAACTGACTGGCAAAAACGATGGCAGTTAATTCAAGAAGCACGAGATGGCGGTTC TATGACACCAGCAGTAATGACTAAGTTACGCCGTTACCAACATCAAGATGAGTTATCTATTTTTGAGGAATGTCAAGTAA TAAGTGCTGAGTTTGTCAGCGATCGCTGGCAATTAAAATGTGATGATGGAATGATGAGAGAATACCATCGTATCTGGTTA GCAACAGGTACAAAACTTGATGTTAGAAAACAACCTATCTTAAAAGAAATTTTGCATACCCACCCACTAGAAATAGTGAA TGGTTTACCAGTATTAGATGAATATTTGCGCTGGTCTGGTTGCGAACTATTTATTATGGGTGGGCTAGCTGCTTTGCAAG TAGGGCCTGTCGCCAGAAACCTATCGGGGGCAAGAATGGCAAGTGGCCGCATTGTATCAGCATTGAAAAGTTGA
Upstream 100 bases:
>100_bases AACCAGGGAAAAAATCTACTTTGCGAGTCCTTACAGGTATATATATAATTAATAAAAAAAAGAATGATAATCATTCTTAA AATTATTGTTTTTTAATTGT
Downstream 100 bases:
>100_bases GCTATGGAAGAAAAATGTCAAAACCTATAATTACTGTAGTAGCTGGCCCACCGGGTGTCGGCAAAACAAGTTTTATTCGA AAACAAATCCCTAAAGCTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 397; Mature: 396
Protein sequence:
>397_residues MSLPIQTKMAIVGAGPHALTLVTHLLQKRKKYHHKIIVFDPSATWMSQWRQQFAAQEIPHLRSPAVHHPDPDPYSLRRFA ENRPNELFPPYDLPGTKLFQEFSQDVVSRWQLEDKVYKASVTNIVPITYRGNPQFRVELDDGNSTIAGQVIMANGGGKPQ LPEWAKKTPTPYPNQCLCHSHQVDLRGLRLRGEKVLIIGGGLTSGHLALGALKRGANVTLMVRRHLKEKLFDAEPGWLGP KYLKGFSAETDWQKRWQLIQEARDGGSMTPAVMTKLRRYQHQDELSIFEECQVISAEFVSDRWQLKCDDGMMREYHRIWL ATGTKLDVRKQPILKEILHTHPLEIVNGLPVLDEYLRWSGCELFIMGGLAALQVGPVARNLSGARMASGRIVSALKS
Sequences:
>Translated_397_residues MSLPIQTKMAIVGAGPHALTLVTHLLQKRKKYHHKIIVFDPSATWMSQWRQQFAAQEIPHLRSPAVHHPDPDPYSLRRFA ENRPNELFPPYDLPGTKLFQEFSQDVVSRWQLEDKVYKASVTNIVPITYRGNPQFRVELDDGNSTIAGQVIMANGGGKPQ LPEWAKKTPTPYPNQCLCHSHQVDLRGLRLRGEKVLIIGGGLTSGHLALGALKRGANVTLMVRRHLKEKLFDAEPGWLGP KYLKGFSAETDWQKRWQLIQEARDGGSMTPAVMTKLRRYQHQDELSIFEECQVISAEFVSDRWQLKCDDGMMREYHRIWL ATGTKLDVRKQPILKEILHTHPLEIVNGLPVLDEYLRWSGCELFIMGGLAALQVGPVARNLSGARMASGRIVSALKS >Mature_396_residues SLPIQTKMAIVGAGPHALTLVTHLLQKRKKYHHKIIVFDPSATWMSQWRQQFAAQEIPHLRSPAVHHPDPDPYSLRRFAE NRPNELFPPYDLPGTKLFQEFSQDVVSRWQLEDKVYKASVTNIVPITYRGNPQFRVELDDGNSTIAGQVIMANGGGKPQL PEWAKKTPTPYPNQCLCHSHQVDLRGLRLRGEKVLIIGGGLTSGHLALGALKRGANVTLMVRRHLKEKLFDAEPGWLGPK YLKGFSAETDWQKRWQLIQEARDGGSMTPAVMTKLRRYQHQDELSIFEECQVISAEFVSDRWQLKCDDGMMREYHRIWLA TGTKLDVRKQPILKEILHTHPLEIVNGLPVLDEYLRWSGCELFIMGGLAALQVGPVARNLSGARMASGRIVSALKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44942; Mature: 44810
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPIQTKMAIVGAGPHALTLVTHLLQKRKKYHHKIIVFDPSATWMSQWRQQFAAQEIPH CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCC LRSPAVHHPDPDPYSLRRFAENRPNELFPPYDLPGTKLFQEFSQDVVSRWQLEDKVYKAS CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE VTNIVPITYRGNPQFRVELDDGNSTIAGQVIMANGGGKPQLPEWAKKTPTPYPNQCLCHS CCEEEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHCCC HQVDLRGLRLRGEKVLIIGGGLTSGHLALGALKRGANVTLMVRRHLKEKLFDAEPGWLGP CCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCH KYLKGFSAETDWQKRWQLIQEARDGGSMTPAVMTKLRRYQHQDELSIFEECQVISAEFVS HHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC DRWQLKCDDGMMREYHRIWLATGTKLDVRKQPILKEILHTHPLEIVNGLPVLDEYLRWSG CCEEEECCCCHHHHHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHCCCHHHHHHHCCCC CELFIMGGLAALQVGPVARNLSGARMASGRIVSALKS CEEEEECCHHHHHHCHHHHCCCCCHHHCCHHHHHHCC >Mature Secondary Structure SLPIQTKMAIVGAGPHALTLVTHLLQKRKKYHHKIIVFDPSATWMSQWRQQFAAQEIPH CCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCC LRSPAVHHPDPDPYSLRRFAENRPNELFPPYDLPGTKLFQEFSQDVVSRWQLEDKVYKAS CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEE VTNIVPITYRGNPQFRVELDDGNSTIAGQVIMANGGGKPQLPEWAKKTPTPYPNQCLCHS CCEEEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHCCCCCCCCCHHCCC HQVDLRGLRLRGEKVLIIGGGLTSGHLALGALKRGANVTLMVRRHLKEKLFDAEPGWLGP CCCCCEEEEECCCEEEEEECCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHCCCCCCCCCH KYLKGFSAETDWQKRWQLIQEARDGGSMTPAVMTKLRRYQHQDELSIFEECQVISAEFVS HHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC DRWQLKCDDGMMREYHRIWLATGTKLDVRKQPILKEILHTHPLEIVNGLPVLDEYLRWSG CCEEEECCCCHHHHHHEEEEECCCCCCCCCCHHHHHHHHCCCHHHHCCCHHHHHHHCCCC CELFIMGGLAALQVGPVARNLSGARMASGRIVSALKS CEEEEECCHHHHHHCHHHHCCCCCHHHCCHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA