Click here to switch to the map view.

The map label for this gene is ycf3 [H]

Identifier: 113477968

GI number: 113477968

Start: 7045073

End: 7045621

Strand: Reverse

Name: ycf3 [H]

Synonym: Tery_4580

Alternate gene names: 113477968

Gene position: 7045621-7045073 (Counterclockwise)

Preceding gene: 113477969

Following gene: 113477967

Centisome position: 90.91

GC content: 33.15

Gene sequence:

>549_bases
ATGTACCTGAAAATATATATTTGTAATATGCCCAGAACTCAACGTAATGATAACTTCATTGATAAGTCATTTACGGTTAT
GGCAGATTTAATTTTGAAGCTACTACCAACAAATAATCAGGCGAAAGAGGCTTTTGCCTATTATCGTGATGGAATGTCTG
CACAAGCTGATGGAGAATATGCTGAAGCTTTGGAAAATTACTATGAAGCTTTAAACTTAGAAGATGACCCTAATGACCGG
AGTTATATTCTTTATAATATAGGCTTAATTCATGCTAGTAATGGGGAACACGATCAGGCATTAGAATATTATCACCAAGC
TTTAGAAAATAATCCCAGAATGCCTCAAGCTTTAAATAATATTGCTGTGATTTTTCACTATAGAGGAGAAAAGGCAAAAG
AAACAGGTAATTCAAGAGATGCAAATAGTTATTTTGATCAAGCTGCAGAATATTGGAAACAGGCAATTAGTTTAGCTCCT
AATAATTATATTGAAGCTCAAAATTGGTTGAAAACTACTGGGCGTTCAAATAAAGAGGTATTTTTCTAA

Upstream 100 bases:

>100_bases
AGAATGTAAAAAATAATTTGTGATCTAAAGATTAGATAAATTTTAGGCTGATATTTATGAGAAGTTACACATACTGCTCA
AAATTGTTCTACTCTAGTCT

Downstream 100 bases:

>100_bases
TTTTAGTTAATTTTTAAGTTAAGAAAACAGGAAAAATTAGTGATGATTATAGATAATGAACAAGTGCGCAAAGTTGCACA
TTTAGCTAGGTTAGAGCTTG

Product: photosystem I assembly protein Ycf3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MYLKIYICNMPRTQRNDNFIDKSFTVMADLILKLLPTNNQAKEAFAYYRDGMSAQADGEYAEALENYYEALNLEDDPNDR
SYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNNIAVIFHYRGEKAKETGNSRDANSYFDQAAEYWKQAISLAP
NNYIEAQNWLKTTGRSNKEVFF

Sequences:

>Translated_182_residues
MYLKIYICNMPRTQRNDNFIDKSFTVMADLILKLLPTNNQAKEAFAYYRDGMSAQADGEYAEALENYYEALNLEDDPNDR
SYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNNIAVIFHYRGEKAKETGNSRDANSYFDQAAEYWKQAISLAP
NNYIEAQNWLKTTGRSNKEVFF
>Mature_182_residues
MYLKIYICNMPRTQRNDNFIDKSFTVMADLILKLLPTNNQAKEAFAYYRDGMSAQADGEYAEALENYYEALNLEDDPNDR
SYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNNIAVIFHYRGEKAKETGNSRDANSYFDQAAEYWKQAISLAP
NNYIEAQNWLKTTGRSNKEVFF

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022818
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 21106; Mature: 21106

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKIYICNMPRTQRNDNFIDKSFTVMADLILKLLPTNNQAKEAFAYYRDGMSAQADGEY
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHH
AEALENYYEALNLEDDPNDRSYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNN
HHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCC
IAVIFHYRGEKAKETGNSRDANSYFDQAAEYWKQAISLAPNNYIEAQNWLKTTGRSNKEV
EEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
FF
CC
>Mature Secondary Structure
MYLKIYICNMPRTQRNDNFIDKSFTVMADLILKLLPTNNQAKEAFAYYRDGMSAQADGEY
CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHH
AEALENYYEALNLEDDPNDRSYILYNIGLIHASNGEHDQALEYYHQALENNPRMPQALNN
HHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHCC
IAVIFHYRGEKAKETGNSRDANSYFDQAAEYWKQAISLAPNNYIEAQNWLKTTGRSNKEV
EEEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
FF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA