Click here to switch to the map view.

The map label for this gene is pbsY

Identifier: 113477883

GI number: 113477883

Start: 6925633

End: 6925752

Strand: Reverse

Name: pbsY

Synonym: Tery_4485

Alternate gene names: 113477883

Gene position: 6925752-6925633 (Counterclockwise)

Preceding gene: 113477884

Following gene: 113477882

Centisome position: 89.36

GC content: 34.17

Gene sequence:

>120_bases
ATGGATTTTGACTTTCGCTTGTTAATTGTTCTATTACCTATACTTGCTGCTGCTGGTTGGGCTGTATTTAATATTGGTGT
TGTGGCTATGCAACAATTTCAAAAGTTCTTGAATAAATAG

Upstream 100 bases:

>100_bases
AATATGAAAATTTTTTGATGAGAAAGCTTAACATAAAATTCAAATTGCGATAGATTAAACAATAAAGAAAGATACTTTTA
AGTCTTGAGGAGAAAAATAA

Downstream 100 bases:

>100_bases
TTCTAAAGTAAGCATAATATGACATTTTCACTCTGAGATGTAAAATAAGAGTTGGTTATTTACTAAAAGTAAAAAGGTCT
GGGAAACTTTCTTATCTATT

Product: photosystem II protein Y

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 39; Mature: 39

Protein sequence:

>39_residues
MDFDFRLLIVLLPILAAAGWAVFNIGVVAMQQFQKFLNK

Sequences:

>Translated_39_residues
MDFDFRLLIVLLPILAAAGWAVFNIGVVAMQQFQKFLNK
>Mature_39_residues
MDFDFRLLIVLLPILAAAGWAVFNIGVVAMQQFQKFLNK

Specific function: Manganese-binding polypeptide with L-arginine metabolizing enzyme activity. Component of the core of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBY_TRIEI (Q10WA3)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_723944.1
- STRING:   Q10WA3
- GeneID:   4246138
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_4485
- NMPDR:   fig|203124.1.peg.3231
- ProtClustDB:   PRK13240
- BioCyc:   TERY203124:TERY_4485-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_00717
- InterPro:   IPR009388

Pfam domain/function: PF06298 PsbY

EC number: NA

Molecular weight: Translated: 4439; Mature: 4439

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1baf0518)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDFRLLIVLLPILAAAGWAVFNIGVVAMQQFQKFLNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure
MDFDFRLLIVLLPILAAAGWAVFNIGVVAMQQFQKFLNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA