Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477850

Identifier: 113477850

GI number: 113477850

Start: 6861233

End: 6861625

Strand: Reverse

Name: 113477850

Synonym: Tery_4451

Alternate gene names: NA

Gene position: 6861625-6861233 (Counterclockwise)

Preceding gene: 113477858

Following gene: 113477849

Centisome position: 88.54

GC content: 26.21

Gene sequence:

>393_bases
ATGAAAAAACAAAACCTATGTAAAAAATATTACTGCTTGTTGATTCAATACAACAGTAATAATAACTATTATGTTTTAAG
ACTTAAGCCAAAATTAGGTGATCCGAAAAAAAATCATCATTTGAAAAACAAAAATCACGGTAATAAACCCATTTTATTAT
TGAAGTCCCCCAATGATGATATTTATTTTCAATATAATCAAATACCCTGGGAAAGAAAACCAAAAATTAGATGGCATAGA
TTATTAAAAATAGCAATAGCAATAATAACTACCTTATTAACCAATTTTGCTCCTGTGAATCAAGAAAAATTAGATACCCA
GACCCAAACCATGGAAATTATCAAAAATTATGCAACAATGACTAGAATAATTCTCGAATTTTATGATAAATAA

Upstream 100 bases:

>100_bases
CAATTCCCCTTAACCAGATTCTTCAGAGGGAAATTTTTGGGGCTTACGGAATCAAAAAATATTTCATATCTTGAAATTAC
AGATTTCTAGAAAAAAAAAT

Downstream 100 bases:

>100_bases
ACCAGCAATTATCAATTTTTATGGTAAACAAATTTAAAACTCATCTAAAAATGGGACATTTGCTAAAACATTCTTAACAC
TTACCTAAAAAAAAATTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MKKQNLCKKYYCLLIQYNSNNNYYVLRLKPKLGDPKKNHHLKNKNHGNKPILLLKSPNDDIYFQYNQIPWERKPKIRWHR
LLKIAIAIITTLLTNFAPVNQEKLDTQTQTMEIIKNYATMTRIILEFYDK

Sequences:

>Translated_130_residues
MKKQNLCKKYYCLLIQYNSNNNYYVLRLKPKLGDPKKNHHLKNKNHGNKPILLLKSPNDDIYFQYNQIPWERKPKIRWHR
LLKIAIAIITTLLTNFAPVNQEKLDTQTQTMEIIKNYATMTRIILEFYDK
>Mature_130_residues
MKKQNLCKKYYCLLIQYNSNNNYYVLRLKPKLGDPKKNHHLKNKNHGNKPILLLKSPNDDIYFQYNQIPWERKPKIRWHR
LLKIAIAIITTLLTNFAPVNQEKLDTQTQTMEIIKNYATMTRIILEFYDK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15665; Mature: 15665

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQNLCKKYYCLLIQYNSNNNYYVLRLKPKLGDPKKNHHLKNKNHGNKPILLLKSPNDD
CCCHHHHHEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
IYFQYNQIPWERKPKIRWHRLLKIAIAIITTLLTNFAPVNQEKLDTQTQTMEIIKNYATM
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TRIILEFYDK
HHHHHHHHCC
>Mature Secondary Structure
MKKQNLCKKYYCLLIQYNSNNNYYVLRLKPKLGDPKKNHHLKNKNHGNKPILLLKSPNDD
CCCHHHHHEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
IYFQYNQIPWERKPKIRWHRLLKIAIAIITTLLTNFAPVNQEKLDTQTQTMEIIKNYATM
EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TRIILEFYDK
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA