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The map label for this gene is dacB [C]

Identifier: 113477829

GI number: 113477829

Start: 6827730

End: 6829058

Strand: Reverse

Name: dacB [C]

Synonym: Tery_4430

Alternate gene names: 113477829

Gene position: 6829058-6827730 (Counterclockwise)

Preceding gene: 113477836

Following gene: 113477827

Centisome position: 88.12

GC content: 32.2

Gene sequence:

>1329_bases
ATGCAAAAACAAGTACCTTTAACTACTATCTGTATTTTTTTATATCTAACTGGATGTCAATCTCCCAAACCGGAAATAAT
ATCTCCTAACCCTAAAATAAGTCTTTCTCCACAAGTATCACAAATATCAATTAAAATTCCTGAAAAACCCTTAACATTAC
CTACAGATAACTCAAATTCAATAACCTCTGGTGAAGTACAGACATATTTAAAAAGATTAACTACTCAAGGTTTTTCTCCA
CAAAATCAAGGAGTCTGGATACAATCAAATGATACTTTATTCGCAAATCATCAAGGTAAAATTCCTTTGCCAGCAGCTTC
AATTACTAAAGTAGCAACTTCTTTAGTTGCCTTAGAAACTTTTAATCCTGACCATCAATTTATTACCTTAATTGCCACAA
CAGGAAAAATTGAAAATGGTGTATTAAATGGGGATTTAATTATTCAAGGAGGAGAAGATCCATTTTTTGTTTGGGAAGAA
GCGATCGCTATTGGTAATCTTTTAAATAAAATAGGCATTCAAAGAGTTACTGGGAATCTCATTATTACTGGTAAATTTTA
TATGAACTTTGAATCTAATGCTAAGACTGCTGGTAATTTACTTAAACAAGGATTAAATAGTCAAATTTGGCAGAGAGAAG
CTTTAACTCAATATCAAACTTTACCTCCAGAAACCCCAAAACCTCAAGTCATAATTGATGGTGTTGTAGAAGTTTCTCCC
AGTACTCCTGAAAATATAAAACTATTAATTAGGCATTATTCTTTTCCCCTAGTAGAACTAGTCAAAAAAATGAATCAATA
TAGCAATAATTTAATGGCGGATATGTTAGCTGAAGCTGTAGGAGGTTATCAAGTAGTTGCAACAAAAGCTGCTGAATTGA
CAGGAGTACCAAAAGAAGAAATTCAATTAATTAATGGCTCTGGTTTAGGAGAAGAAAATCGTATTTCTCCTAGGGCTGCT
ACAGGAATGTTTCTAGCAATTAATAATTATCTTCAGCAATACAATATGAGTGTGGCAGATGCGTTTGTTATAGTTGGTAA
AGATAAAGGTATTTTAGATGAACGTAAACAACTTCCAAATTTTGCAGTAGTTAAGTCTGGTACTCTAAATTATGTTAGTA
GTTTAGCAGGTGCTTTACCAACCAAAGAAAAAGGAGTTATTTGGTTTACAATTCTGAATAAAGGACCTAGTGTAACTCAA
TTAAGAAATCAACAAGAAATTTTACTAAGAGATATTGTGAAAAAGTGGGGTAATGCTGAGTCATTGTCACCAGAATTAAC
AGCTAATCCTCAGAGAAAAACTAAAACTTCTCGTAGCGAAATTATATAA

Upstream 100 bases:

>100_bases
TGTTTGGTTACTCCTAGGGAGAAGCTAGCTACTTTTCTAAAATCAAGGAACCTACAACTTATTTACTAAATTTTTACCAT
AATAATTTCAAATTAAACTA

Downstream 100 bases:

>100_bases
AAAAGTAAGAGGGAAGAAATAAGAAGTAGGAAGAAAAATACAAAGTTTTTTATCTTCCTATTTTTGCTTTATAGTAGTAT
CTTTGTCTAATTACAGATAA

Product: peptidase S13, D-Ala-D-Ala carboxypeptidase C

Products: NA

Alternate protein names: D-Ala-D-Ala Carboxypeptidase 3 Family; D-Alanyl-D-Alanine Carboxypeptidase; D-Ala-D-Ala Carboxypeptidase; Carboxypeptidase; Serine-Type D-Ala-D-Ala Carboxypeptidase

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MQKQVPLTTICIFLYLTGCQSPKPEIISPNPKISLSPQVSQISIKIPEKPLTLPTDNSNSITSGEVQTYLKRLTTQGFSP
QNQGVWIQSNDTLFANHQGKIPLPAASITKVATSLVALETFNPDHQFITLIATTGKIENGVLNGDLIIQGGEDPFFVWEE
AIAIGNLLNKIGIQRVTGNLIITGKFYMNFESNAKTAGNLLKQGLNSQIWQREALTQYQTLPPETPKPQVIIDGVVEVSP
STPENIKLLIRHYSFPLVELVKKMNQYSNNLMADMLAEAVGGYQVVATKAAELTGVPKEEIQLINGSGLGEENRISPRAA
TGMFLAINNYLQQYNMSVADAFVIVGKDKGILDERKQLPNFAVVKSGTLNYVSSLAGALPTKEKGVIWFTILNKGPSVTQ
LRNQQEILLRDIVKKWGNAESLSPELTANPQRKTKTSRSEII

Sequences:

>Translated_442_residues
MQKQVPLTTICIFLYLTGCQSPKPEIISPNPKISLSPQVSQISIKIPEKPLTLPTDNSNSITSGEVQTYLKRLTTQGFSP
QNQGVWIQSNDTLFANHQGKIPLPAASITKVATSLVALETFNPDHQFITLIATTGKIENGVLNGDLIIQGGEDPFFVWEE
AIAIGNLLNKIGIQRVTGNLIITGKFYMNFESNAKTAGNLLKQGLNSQIWQREALTQYQTLPPETPKPQVIIDGVVEVSP
STPENIKLLIRHYSFPLVELVKKMNQYSNNLMADMLAEAVGGYQVVATKAAELTGVPKEEIQLINGSGLGEENRISPRAA
TGMFLAINNYLQQYNMSVADAFVIVGKDKGILDERKQLPNFAVVKSGTLNYVSSLAGALPTKEKGVIWFTILNKGPSVTQ
LRNQQEILLRDIVKKWGNAESLSPELTANPQRKTKTSRSEII
>Mature_442_residues
MQKQVPLTTICIFLYLTGCQSPKPEIISPNPKISLSPQVSQISIKIPEKPLTLPTDNSNSITSGEVQTYLKRLTTQGFSP
QNQGVWIQSNDTLFANHQGKIPLPAASITKVATSLVALETFNPDHQFITLIATTGKIENGVLNGDLIIQGGEDPFFVWEE
AIAIGNLLNKIGIQRVTGNLIITGKFYMNFESNAKTAGNLLKQGLNSQIWQREALTQYQTLPPETPKPQVIIDGVVEVSP
STPENIKLLIRHYSFPLVELVKKMNQYSNNLMADMLAEAVGGYQVVATKAAELTGVPKEEIQLINGSGLGEENRISPRAA
TGMFLAINNYLQQYNMSVADAFVIVGKDKGILDERKQLPNFAVVKSGTLNYVSSLAGALPTKEKGVIWFTILNKGPSVTQ
LRNQQEILLRDIVKKWGNAESLSPELTANPQRKTKTSRSEII

Specific function: Not Involved In Transpeptidation But Exclusively Catalyzes A Dd-Carboxypeptidase And Dd-Endopeptidase Reaction. [C]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789573, Length=127, Percent_Identity=33.8582677165354, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.16.4; 3.4.99.- [C]

Molecular weight: Translated: 48495; Mature: 48495

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKQVPLTTICIFLYLTGCQSPKPEIISPNPKISLSPQVSQISIKIPEKPLTLPTDNSNS
CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCCC
ITSGEVQTYLKRLTTQGFSPQNQGVWIQSNDTLFANHQGKIPLPAASITKVATSLVALET
CCCHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHEEC
FNPDHQFITLIATTGKIENGVLNGDLIIQGGEDPFFVWEEAIAIGNLLNKIGIQRVTGNL
CCCCCEEEEEEEECCCCCCCEECCCEEEECCCCCEEHHHHHHHHHHHHHHHHHEEECCCE
IITGKFYMNFESNAKTAGNLLKQGLNSQIWQREALTQYQTLPPETPKPQVIIDGVVEVSP
EEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECC
STPENIKLLIRHYSFPLVELVKKMNQYSNNLMADMLAEAVGGYQVVATKAAELTGVPKEE
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCHHH
IQLINGSGLGEENRISPRAATGMFLAINNYLQQYNMSVADAFVIVGKDKGILDERKQLPN
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHCCC
FAVVKSGTLNYVSSLAGALPTKEKGVIWFTILNKGPSVTQLRNQQEILLRDIVKKWGNAE
EEEEECCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCC
SLSPELTANPQRKTKTSRSEII
CCCCCCCCCCCHHHCCHHHCCC
>Mature Secondary Structure
MQKQVPLTTICIFLYLTGCQSPKPEIISPNPKISLSPQVSQISIKIPEKPLTLPTDNSNS
CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCCC
ITSGEVQTYLKRLTTQGFSPQNQGVWIQSNDTLFANHQGKIPLPAASITKVATSLVALET
CCCHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHEEC
FNPDHQFITLIATTGKIENGVLNGDLIIQGGEDPFFVWEEAIAIGNLLNKIGIQRVTGNL
CCCCCEEEEEEEECCCCCCCEECCCEEEECCCCCEEHHHHHHHHHHHHHHHHHEEECCCE
IITGKFYMNFESNAKTAGNLLKQGLNSQIWQREALTQYQTLPPETPKPQVIIDGVVEVSP
EEEEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECC
STPENIKLLIRHYSFPLVELVKKMNQYSNNLMADMLAEAVGGYQVVATKAAELTGVPKEE
CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHCCCCHHH
IQLINGSGLGEENRISPRAATGMFLAINNYLQQYNMSVADAFVIVGKDKGILDERKQLPN
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHCCC
FAVVKSGTLNYVSSLAGALPTKEKGVIWFTILNKGPSVTQLRNQQEILLRDIVKKWGNAE
EEEEECCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHHHHCCCCC
SLSPELTANPQRKTKTSRSEII
CCCCCCCCCCCHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: Preferential cleavage is (Ac)2-L-Lys-D-Ala D-Ala and Also transpeptidation of peptidyl-alanyl moieties that are N-acyl substituents of D-alanine [C]

General reaction: Hydrolase; Acting on peptide bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA