Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113477681

Identifier: 113477681

GI number: 113477681

Start: 6590117

End: 6590695

Strand: Reverse

Name: 113477681

Synonym: Tery_4272

Alternate gene names: NA

Gene position: 6590695-6590117 (Counterclockwise)

Preceding gene: 113477682

Following gene: 113477680

Centisome position: 85.04

GC content: 39.03

Gene sequence:

>579_bases
GTGCAAACTAACTTAGCTGAAAAATGGCGATCGGCTTTTTGGCAAGTCGTACAACAACCTACCCATGCTCAAACTCTCCA
AACTGCCGGAGAGCAAAAACAACTTAAGGAGTGGACTTCAGCTTTAACTGCTGTAGTAGTTTCTACTTGTCAAACATTGG
GATGGCAAGCATCAGCTAAAGGTTATTCTCTAGAGTTGTTGCCAGTCGCTACTAATGAGTTTTTAACAATGGATGTGATG
GCGTTTGTTGGTGCTGCTCAACGCTGGCAGTTTCCTATTGCAGTTATAGAATTAGAAAATAATTGGGAACGCAGTGCTTA
TTCTTTGTGGAAAGTTCTCTGTGTGCGAGTGGCTTTACGGGTGGTATTTTGTTATTGCCAAACTGCTGGAGAAAGAAGAG
AATTAATTAATTATTTAGAACGGGAAATTTTACAACCTATTTTACCAAGAGAAAGATTAGATTTACAGGGAGAAACTTTA
GTTGTAGTAGGAAGTAGAGAAGCAGCTTTGACATTTCCCTACGATTTCTTTAAGTGGTGGTTAATGGAGGTGAATATTGG
CAAATTTACACTTTTTTGA

Upstream 100 bases:

>100_bases
AGCACGTCCTGTTTTAGAACAGTTAAGGTTGTCTGGAATGTATCTATCAGAGAGATTAATGAATCAAGTCTTGATGTCAG
TGGGAGAGTAATTTTCAAAA

Downstream 100 bases:

>100_bases
ACTTTGTTTGTTTGCCGGATTAAACCTCACCTACAGTGTTCTGTCTAAGAATTAGCAGAATGAGGCTATAGCTTCAATTA
GGAACAAAAAAAGGAGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MQTNLAEKWRSAFWQVVQQPTHAQTLQTAGEQKQLKEWTSALTAVVVSTCQTLGWQASAKGYSLELLPVATNEFLTMDVM
AFVGAAQRWQFPIAVIELENNWERSAYSLWKVLCVRVALRVVFCYCQTAGERRELINYLEREILQPILPRERLDLQGETL
VVVGSREAALTFPYDFFKWWLMEVNIGKFTLF

Sequences:

>Translated_192_residues
MQTNLAEKWRSAFWQVVQQPTHAQTLQTAGEQKQLKEWTSALTAVVVSTCQTLGWQASAKGYSLELLPVATNEFLTMDVM
AFVGAAQRWQFPIAVIELENNWERSAYSLWKVLCVRVALRVVFCYCQTAGERRELINYLEREILQPILPRERLDLQGETL
VVVGSREAALTFPYDFFKWWLMEVNIGKFTLF
>Mature_192_residues
MQTNLAEKWRSAFWQVVQQPTHAQTLQTAGEQKQLKEWTSALTAVVVSTCQTLGWQASAKGYSLELLPVATNEFLTMDVM
AFVGAAQRWQFPIAVIELENNWERSAYSLWKVLCVRVALRVVFCYCQTAGERRELINYLEREILQPILPRERLDLQGETL
VVVGSREAALTFPYDFFKWWLMEVNIGKFTLF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22186; Mature: 22186

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTNLAEKWRSAFWQVVQQPTHAQTLQTAGEQKQLKEWTSALTAVVVSTCQTLGWQASAK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GYSLELLPVATNEFLTMDVMAFVGAAQRWQFPIAVIELENNWERSAYSLWKVLCVRVALR
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
VVFCYCQTAGERRELINYLEREILQPILPRERLDLQGETLVVVGSREAALTFPYDFFKWW
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEECCHHHHHHH
LMEVNIGKFTLF
HHHCCCCEEEEC
>Mature Secondary Structure
MQTNLAEKWRSAFWQVVQQPTHAQTLQTAGEQKQLKEWTSALTAVVVSTCQTLGWQASAK
CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GYSLELLPVATNEFLTMDVMAFVGAAQRWQFPIAVIELENNWERSAYSLWKVLCVRVALR
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
VVFCYCQTAGERRELINYLEREILQPILPRERLDLQGETLVVVGSREAALTFPYDFFKWW
HHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCEEECCHHHHHHH
LMEVNIGKFTLF
HHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA