Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 113477644

GI number: 113477644

Start: 6531525

End: 6532598

Strand: Reverse

Name: cph2 [H]

Synonym: Tery_4231

Alternate gene names: 113477644

Gene position: 6532598-6531525 (Counterclockwise)

Preceding gene: 113477645

Following gene: 113477643

Centisome position: 84.29

GC content: 29.89

Gene sequence:

>1074_bases
ATGTCTAATAAAAATAAAACTATGTTTAGGAACAATTATCTTAAGCAAAAAGATTCTTTAAATACCCTATTAGTAGAAGA
TAATCTAGGGGATGCTTTTATTATTAAGCAGTTATTAAAATTTGAATCATCCTTAAAGTTTTTTGTGACTCATTGTAGTA
CATTATCTTTAGCAACTAAGCAACTTAATCAAACAAATTTTGATGTTATTTTACTTGATTTAGGACTACCTGATAGTCAA
GGATTTGAGACTATTTCCCAGATGATAGAAATAACTACTAATATTCCAATTATTGTTTTAACTGGTAAGAATGATGAGGA
TTTTTCTCTTGAAGTAGTTCAAAAAGGAGCGCAGGATTATTTAGTGAAAAATGAAATTTCAGCAGAAGTCTTAATCCGTT
CTATTCGCTATTCTTTGGAAAGAATTAATTTAGTACAAAAACTCAAGCAAAGAGAACAACAATTAAATAGCTTTAATGAA
AAATTAACTCATGAAGTCAGAATAAGAACTGATGAACTTAAGAAACAAAATGAGCAGCTAGAACATTTACTAAAAATCTC
AAATACAGATCCTTTGACAGGTATTCCTAATCGCTATTGCTGGGAAACAGTCTTACAACAAGATTGGAAAAAATCTATCT
ACGACGCTCAGCCCATCTCTTTGATAATGATAGATATTGATTTTTTTAAATTATTTAATGATGCTTATGGTCACCCTGAA
GGGGATATTTGTTTAAGAAAAGTAGCTCAAGAAATTAAAAAACCTTTAACAAGAACAACAGACTTAGCTGCTCGTTATGG
AGGAGAAGAATTTGTGGTAGTATTACCCAATACAGGCAAACATAGAGCTATGTTTATTGCTGAAAGTATTCGTATGCAAG
TTAATAGTTTAAAAATTGTTAATGAGGATTCAAAAGTTGATAAATATATTACTATTAGTTTAGGTGTAGCAACAACTATT
CCGACTATAAAATCACATCTAGACGAATTAATTTCTCAAGCCGATAAAGCTCTTTATTTTGCTAAAAAAAATGGCCGAAA
TTGTGTCAGGCATTCTAGCTATGATACTGCTTAA

Upstream 100 bases:

>100_bases
GTGCTTTCACTAACCCCTAATTTTTATTTCTTTCCTGATGAATTCTCAGATCCTTATCCTAACATAAAAAAAATAAAATA
GCAAAATATAATTTTGTTAA

Downstream 100 bases:

>100_bases
ATTAACAGCTTTGTGAAAGGATGAAGAAGTCAAAAGCTAAAGTTTAGTAGTCGAAGTTCTTCCTCTATCTTATCAATTTT
GGAGCTTTATATCTAGTTGA

Product: response regulator receiver modulated diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSNKNKTMFRNNYLKQKDSLNTLLVEDNLGDAFIIKQLLKFESSLKFFVTHCSTLSLATKQLNQTNFDVILLDLGLPDSQ
GFETISQMIEITTNIPIIVLTGKNDEDFSLEVVQKGAQDYLVKNEISAEVLIRSIRYSLERINLVQKLKQREQQLNSFNE
KLTHEVRIRTDELKKQNEQLEHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPE
GDICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIVNEDSKVDKYITISLGVATTI
PTIKSHLDELISQADKALYFAKKNGRNCVRHSSYDTA

Sequences:

>Translated_357_residues
MSNKNKTMFRNNYLKQKDSLNTLLVEDNLGDAFIIKQLLKFESSLKFFVTHCSTLSLATKQLNQTNFDVILLDLGLPDSQ
GFETISQMIEITTNIPIIVLTGKNDEDFSLEVVQKGAQDYLVKNEISAEVLIRSIRYSLERINLVQKLKQREQQLNSFNE
KLTHEVRIRTDELKKQNEQLEHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPE
GDICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIVNEDSKVDKYITISLGVATTI
PTIKSHLDELISQADKALYFAKKNGRNCVRHSSYDTA
>Mature_356_residues
SNKNKTMFRNNYLKQKDSLNTLLVEDNLGDAFIIKQLLKFESSLKFFVTHCSTLSLATKQLNQTNFDVILLDLGLPDSQG
FETISQMIEITTNIPIIVLTGKNDEDFSLEVVQKGAQDYLVKNEISAEVLIRSIRYSLERINLVQKLKQREQQLNSFNEK
LTHEVRIRTDELKKQNEQLEHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPEG
DICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIVNEDSKVDKYITISLGVATTIP
TIKSHLDELISQADKALYFAKKNGRNCVRHSSYDTA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=38.7640449438202, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=36.094674556213, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=36.4197530864198, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=133, Percent_Identity=40.6015037593985, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=34.6820809248555, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=38.6503067484663, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=34.0659340659341, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=139, Percent_Identity=35.2517985611511, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=33.1460674157303, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=158, Percent_Identity=29.1139240506329, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081977, Length=163, Percent_Identity=31.9018404907975, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 40910; Mature: 40778

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKNKTMFRNNYLKQKDSLNTLLVEDNLGDAFIIKQLLKFESSLKFFVTHCSTLSLATK
CCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLNQTNFDVILLDLGLPDSQGFETISQMIEITTNIPIIVLTGKNDEDFSLEVVQKGAQDY
HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCHHHH
LVKNEISAEVLIRSIRYSLERINLVQKLKQREQQLNSFNEKLTHEVRIRTDELKKQNEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
EHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPE
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCC
GDICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEEE
NEDSKVDKYITISLGVATTIPTIKSHLDELISQADKALYFAKKNGRNCVRHSSYDTA
CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKNKTMFRNNYLKQKDSLNTLLVEDNLGDAFIIKQLLKFESSLKFFVTHCSTLSLATK
CCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLNQTNFDVILLDLGLPDSQGFETISQMIEITTNIPIIVLTGKNDEDFSLEVVQKGAQDY
HHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCHHHH
LVKNEISAEVLIRSIRYSLERINLVQKLKQREQQLNSFNEKLTHEVRIRTDELKKQNEQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHH
EHLLKISNTDPLTGIPNRYCWETVLQQDWKKSIYDAQPISLIMIDIDFFKLFNDAYGHPE
HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCC
GDICLRKVAQEIKKPLTRTTDLAARYGGEEFVVVLPNTGKHRAMFIAESIRMQVNSLKIV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHEEEE
NEDSKVDKYITISLGVATTIPTIKSHLDELISQADKALYFAKKNGRNCVRHSSYDTA
CCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]