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The map label for this gene is ycjS [C]

Identifier: 113477619

GI number: 113477619

Start: 6484797

End: 6485912

Strand: Reverse

Name: ycjS [C]

Synonym: Tery_4205

Alternate gene names: 113477619

Gene position: 6485912-6484797 (Counterclockwise)

Preceding gene: 113477620

Following gene: 113477618

Centisome position: 83.69

GC content: 35.39

Gene sequence:

>1116_bases
ATGAAAAATCAAACTATTGGCGTAGCAGTTATCGGTACAGGATTTGGTCAAAAGGTACATATACCAGGTTTACAAGCACA
TCACAAAACTGAAGTCTTAGCAGTTTATAATCGAGATTATACAAAAGCTAAATCAATTGCATCAAGCCATAATATTCCTT
ATGCTTTTAACACTATTGAAGAGATAATTGACTTGCCTGAAGTTACTGCCGTAACCATTTCAACTCCTCCATTTCTACAC
TATGAAATGGCAAAGCAAATATTATCCGCTGGGAAACATTTATTGTTAGAAAAACCCACAACTTTAAAAGCAGAAGAAGC
TCAAGAATTATATCATCTTGCTGCTACTAATAAATGTTTAGTAACTATGGATTTTGAGTTTCGTTATATTCCTGCTTGGC
AACTATTTGCCAAAATTTTAGCAGATGGATATGTGGGGGATAAACGCCTAATTAAAATTGATTGGTTAGCATCAAGTCGT
GCTCTCCCAAGCCGTCCTTGGAATTGGTATTCTCAAAAAGATAAAGGAGGTGGTGCATTAGGAGCGATCGCTTCCCATAC
TTTTGATTATATTAACTGGTTATTTGGTCCTGCTAAAAAACTTTGGGGACAACTTAATACATCCATTAAAACTCGTCCTG
ACCCTGCTACAGGAAATGAATTAAAACAAGTTGATGCAGATGATACTTGTAACATTATGTTGGAGTTGGCAGATGGTACT
CCCTGTCAAATTTGTATTAGCTCAGTCACCTATCAAGGGCGTGGTCATTGGGTAGAAGTTTATGGTAGTAAAGGTACTTT
AATTGTTGGTAGCGATAATCAAAAAGATTATGTACATGGGTTTAAAGTTTGGGGTTCTCAAAATGGGGAATCTTTAGGAG
AAATAAACATTCCTAAAAATTTAGATTTTCCGAAGGTTTATTCTGATGGTAGAATTGCACCTTTTATTCGAGTAGTTGAT
AATTGGGTACAGGCTATAGTTGCAGGAAAATCTCTAGTTCCATCTTTGAAAGAGGGTGTTTATTCTCAGTTATTAATGGA
TTTAACCCATGAATCTAATTTAACTGGTACTTGGGTAAACGTACCAGATTTAGATAAATTTATTCAGAATAGGTAG

Upstream 100 bases:

>100_bases
TCATCTTATTGACGTACATTGTGGGGAAAATAGCAACACTACAAAGACTTGATCATTATTACTAAAAACTTACCTTTTTT
CTTCTTACTTCTTATAAACA

Downstream 100 bases:

>100_bases
GGGCTTTGCATGCAATATCTGCAGGCAGTAAGCTTTGATTAAATAAGTAGTTTAAGTCAAATAGCTAGAATTATTAAAAA
TGTTGCTGAAACTTAATTTA

Product: oxidoreductase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MKNQTIGVAVIGTGFGQKVHIPGLQAHHKTEVLAVYNRDYTKAKSIASSHNIPYAFNTIEEIIDLPEVTAVTISTPPFLH
YEMAKQILSAGKHLLLEKPTTLKAEEAQELYHLAATNKCLVTMDFEFRYIPAWQLFAKILADGYVGDKRLIKIDWLASSR
ALPSRPWNWYSQKDKGGGALGAIASHTFDYINWLFGPAKKLWGQLNTSIKTRPDPATGNELKQVDADDTCNIMLELADGT
PCQICISSVTYQGRGHWVEVYGSKGTLIVGSDNQKDYVHGFKVWGSQNGESLGEINIPKNLDFPKVYSDGRIAPFIRVVD
NWVQAIVAGKSLVPSLKEGVYSQLLMDLTHESNLTGTWVNVPDLDKFIQNR

Sequences:

>Translated_371_residues
MKNQTIGVAVIGTGFGQKVHIPGLQAHHKTEVLAVYNRDYTKAKSIASSHNIPYAFNTIEEIIDLPEVTAVTISTPPFLH
YEMAKQILSAGKHLLLEKPTTLKAEEAQELYHLAATNKCLVTMDFEFRYIPAWQLFAKILADGYVGDKRLIKIDWLASSR
ALPSRPWNWYSQKDKGGGALGAIASHTFDYINWLFGPAKKLWGQLNTSIKTRPDPATGNELKQVDADDTCNIMLELADGT
PCQICISSVTYQGRGHWVEVYGSKGTLIVGSDNQKDYVHGFKVWGSQNGESLGEINIPKNLDFPKVYSDGRIAPFIRVVD
NWVQAIVAGKSLVPSLKEGVYSQLLMDLTHESNLTGTWVNVPDLDKFIQNR
>Mature_371_residues
MKNQTIGVAVIGTGFGQKVHIPGLQAHHKTEVLAVYNRDYTKAKSIASSHNIPYAFNTIEEIIDLPEVTAVTISTPPFLH
YEMAKQILSAGKHLLLEKPTTLKAEEAQELYHLAATNKCLVTMDFEFRYIPAWQLFAKILADGYVGDKRLIKIDWLASSR
ALPSRPWNWYSQKDKGGGALGAIASHTFDYINWLFGPAKKLWGQLNTSIKTRPDPATGNELKQVDADDTCNIMLELADGT
PCQICISSVTYQGRGHWVEVYGSKGTLIVGSDNQKDYVHGFKVWGSQNGESLGEINIPKNLDFPKVYSDGRIAPFIRVVD
NWVQAIVAGKSLVPSLKEGVYSQLLMDLTHESNLTGTWVNVPDLDKFIQNR

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI9506675, Length=378, Percent_Identity=24.6031746031746, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI226371727, Length=384, Percent_Identity=23.1770833333333, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI7657212, Length=169, Percent_Identity=29.585798816568, Blast_Score=80, Evalue=3e-15,
Organism=Escherichia coli, GI1787574, Length=203, Percent_Identity=25.1231527093596, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081947, Length=195, Percent_Identity=25.6410256410256, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI19920536, Length=377, Percent_Identity=28.3819628647215, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24581117, Length=165, Percent_Identity=26.0606060606061, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 41262; Mature: 41262

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQTIGVAVIGTGFGQKVHIPGLQAHHKTEVLAVYNRDYTKAKSIASSHNIPYAFNTIE
CCCCEEEEEEEECCCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHH
EIIDLPEVTAVTISTPPFLHYEMAKQILSAGKHLLLEKPTTLKAEEAQELYHLAATNKCL
HHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
VTMDFEFRYIPAWQLFAKILADGYVGDKRLIKIDWLASSRALPSRPWNWYSQKDKGGGAL
EEEECCEEEECHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GAIASHTFDYINWLFGPAKKLWGQLNTSIKTRPDPATGNELKQVDADDTCNIMLELADGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCCC
PCQICISSVTYQGRGHWVEVYGSKGTLIVGSDNQKDYVHGFKVWGSQNGESLGEINIPKN
CHHHEEEHEEECCCCCEEEEECCCCEEEECCCCCCCHHEEEEEECCCCCCCCCEEECCCC
LDFPKVYSDGRIAPFIRVVDNWVQAIVAGKSLVPSLKEGVYSQLLMDLTHESNLTGTWVN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
VPDLDKFIQNR
CCCHHHHHCCC
>Mature Secondary Structure
MKNQTIGVAVIGTGFGQKVHIPGLQAHHKTEVLAVYNRDYTKAKSIASSHNIPYAFNTIE
CCCCEEEEEEEECCCCCEEECCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHHHHHH
EIIDLPEVTAVTISTPPFLHYEMAKQILSAGKHLLLEKPTTLKAEEAQELYHLAATNKCL
HHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEE
VTMDFEFRYIPAWQLFAKILADGYVGDKRLIKIDWLASSRALPSRPWNWYSQKDKGGGAL
EEEECCEEEECHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
GAIASHTFDYINWLFGPAKKLWGQLNTSIKTRPDPATGNELKQVDADDTCNIMLELADGT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCCC
PCQICISSVTYQGRGHWVEVYGSKGTLIVGSDNQKDYVHGFKVWGSQNGESLGEINIPKN
CHHHEEEHEEECCCCCEEEEECCCCEEEECCCCCCCHHEEEEEECCCCCCCCCEEECCCC
LDFPKVYSDGRIAPFIRVVDNWVQAIVAGKSLVPSLKEGVYSQLLMDLTHESNLTGTWVN
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
VPDLDKFIQNR
CCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]