| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476815
Identifier: 113476815
GI number: 113476815
Start: 5053846
End: 5054205
Strand: Reverse
Name: 113476815
Synonym: Tery_3295
Alternate gene names: NA
Gene position: 5054205-5053846 (Counterclockwise)
Preceding gene: 113476816
Following gene: 113476814
Centisome position: 65.21
GC content: 31.94
Gene sequence:
>360_bases ATGAGTAGTATCCTTCCCGTAATTTTTGTATGGTTTATTTCAGTTTTTTGTGCTTGTTTAGGTGTTATTATTGGAGGTAC TACTGGAGGAGTAGTTGGTGCAATTACTGGCTTAATTACCAAATCTAGGTGTACAATGAGAGTATTTAATGTAGCTACTT TCACTTCACTTTTAATGACAGTTATTTTTTTTATTGTAGCTCGTGAAAAAATTCAACCTCTCAATTGTGATGATGGCTTA GAGGAAGTTTATATTTGTTTAAGTCCGTTATTTATTCCTCTTTGGGGAGCTATATTTGGAGGTATATTTGGCTCATTTAT CGGAGTATTGTTTGAAATAAACAGAAAAAAAAGTCATTAA
Upstream 100 bases:
>100_bases CAAGCATCTTGCTCGCAGCTCATTTTACCTCACCCTTAATGAATTTCTCTATTCCCCAATCTCCCCATTAATATCTAGTA AAAAAGATCAGGATAATTTT
Downstream 100 bases:
>100_bases ATTGGAGTTGCTGAAGTATAGGTATAATTTTTGTGTTTCCTATCCTAATTCTCTAGTTCCTAAAACCGTTAATACTGAAC TAAAAAACAAGTTAATGATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 119; Mature: 118
Protein sequence:
>119_residues MSSILPVIFVWFISVFCACLGVIIGGTTGGVVGAITGLITKSRCTMRVFNVATFTSLLMTVIFFIVAREKIQPLNCDDGL EEVYICLSPLFIPLWGAIFGGIFGSFIGVLFEINRKKSH
Sequences:
>Translated_119_residues MSSILPVIFVWFISVFCACLGVIIGGTTGGVVGAITGLITKSRCTMRVFNVATFTSLLMTVIFFIVAREKIQPLNCDDGL EEVYICLSPLFIPLWGAIFGGIFGSFIGVLFEINRKKSH >Mature_118_residues SSILPVIFVWFISVFCACLGVIIGGTTGGVVGAITGLITKSRCTMRVFNVATFTSLLMTVIFFIVAREKIQPLNCDDGLE EVYICLSPLFIPLWGAIFGGIFGSFIGVLFEINRKKSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12957; Mature: 12826
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILPVIFVWFISVFCACLGVIIGGTTGGVVGAITGLITKSRCTMRVFNVATFTSLLMT CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIFFIVAREKIQPLNCDDGLEEVYICLSPLFIPLWGAIFGGIFGSFIGVLFEINRKKSH HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SSILPVIFVWFISVFCACLGVIIGGTTGGVVGAITGLITKSRCTMRVFNVATFTSLLMT CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIFFIVAREKIQPLNCDDGLEEVYICLSPLFIPLWGAIFGGIFGSFIGVLFEINRKKSH HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA