| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476789
Identifier: 113476789
GI number: 113476789
Start: 5008408
End: 5010945
Strand: Reverse
Name: 113476789
Synonym: Tery_3265
Alternate gene names: NA
Gene position: 5010945-5008408 (Counterclockwise)
Preceding gene: 113476790
Following gene: 113476785
Centisome position: 64.66
GC content: 33.85
Gene sequence:
>2538_bases ATGAAGATCATAAAATTGCTCGCCATTACTCTATTAAGTTTCTGTATCACTGTGGGAATTAATGTTTTACCTCCCACTTT AGCTGAATCTTCTGCCACTCATCTAGTTCAAGAAGGAACTCAATTATTACAACAAGGAAAGGCAGAAGCAGCATTAGAAA TTTGGCAAAAAGCAGAGGAACTTTATCGCCAAAATCAAAATCAAACTGGTATTATCGGTACCAAAATTAATCAAGCTCAA GCTTTAACCAGTTTGGGTTTTCATGAACGTTCGTGTAATACTGTCTTAAAAGCATTTGGCAATGATTTAGAATGCGCTCG CTTAACTGAAAATGACTTAGAAAATGTTCTGGAAAAGTTTCAAACATCAAATACTAGCCTAAATTTTCAGGGGTTACAAA TCTTAGGAAATGGACTGCTGGCGTTCGGTAAATTGGAGTTATCTGAAAAGGTATTAGAAGCAAGTTATAAGTGGGTAAAT TCTAACAATACTAAAGCTCAATTGTTGATAAGTTTAGGTAACAATAGGCTTTCTCAAGCTCAAAATATTGCTGTCGATCG TAGAAGTGGAAAAGATGAACGAGCGCTTCGAACCCTAGTTGATCAAAGTTTATCTAATTATCAAGAAGCTGCCAGTATTT CTACTGACAAATCAGTTCAAATTCAAGGAACTATTAATAATCTTAGTTTGCTAGTCAAATTTACTAAAGAAATTGGTGAT TTAGATACTTATGTACAATTTCAGATTGAAACTTTACCCGAAATTATTGATTTTTTAAATCAAATTAATCCTACTCCTAA ATCAATTAGAGCCAGAATTAAATTAGCAGAAATTTTTACAAATATTGAGGAAATTAAAGATCAATCAGCTTTTGTTGAAT TTCAAACTAATATTACTAAGTTAACTCCACCTAGCGAATTATTAAATCAGGCAATTGAAGAAGCAAAAGATATTAATAAT TTCCGTTTAGAAGCTTATGGAATTGGTACCCAGGCAAAATTTAATATCAAAAAAGGAAACCTAGAAAAAGCACTTAAATT GACAAATAAAGCATTATTGACTGCTCAAAAAGTATCTGCTTATGATATTGTTTATCAACTCCAAGAACAATTAGGAGATA TTTTGATTAAGCAAGGAAATTATTCAGAGGCACTCTTGGCTGACAAATCTGCTTTTAATACTCTCCAAGTTTTACGACAG GATTTAGTAGTATTAAATAGAGATATTCAGTTTAACTTTCGTGATAGTATTGAACCTTTGTATAGAAAATTGCTAGGCTT ATTACTGCAACCTGAACTTGGCTTAAATCAACCCAATGTGGCAAATATTAAAGTTGCTGTTGAAGTAATTGAATCTCTAC AATTAGCAGAATTGGATAATTTTTTCCAAGATGCTTGTGTGAGGGCTCAGGATATTAATTTTGATGAAATTGATCAGAAT GCAGCTGTTATTTATCCAATCTTATTCGAGGATCGATTAAGTGTGATTCTCAAATTGCCTGGTACTGATAATTTTCGTTA TGCTAGCTTCAGTGAGAGTAATTTTAAAGCCATCGATAGAGCCATAAATGGCAAAATTAATCAATATATCAAAGAACAAA CTCCAATGGATCGTCGTATAGTCAAAGGGGGAAAGCGGGAGTTAAATAAACTTTATCAGTGGTTAATCAAACCTTTTGAA GCATATTTGGAAATAGACGATGAATATGATACGAGTCAAATAAAAACCCTAGTTTTTGTCTTGGAAGGAGCACTTAGAAA TATTCCTATGTCCGCTTTATATGATAGTGAACGGGAACGATATCTAGTGGAACGATACGCGATCGCTGTAGCTCCCAGTT TGCAATTGCTTCCTCCAAAAGTATTATTAGAAGGTAAGTTACAAGTGTTAATTGCTGGAACAGATAAAAAAGCACCAAGT TATGGTGAGAAATATAATCCTTTAAAAAATGTCAAACAGGAACTAGAGAGTATTAAGAAAATTATACCAAAGTCTGAGAC ATTAGCAGATGAAAAATTCACGGCAATTAATATTCAAGACCAAATTAATTCTGTACCCTTTAACATTGTCCACATTGCAA CTCACGGACAATTTAGCTCTAATATTGAGGAGACTGCTATTTTTGCATGGGATAAACCTATTAATGTTAAAGATTTTGAA CAACTGCTCCAGAGTGAGAATTTGCAGCGATCGGATCGAGCTATAGAGTTATTAATTTTAAGTGCTTGTCAGACAGCTAT TGGAGATCAACGAGCAGCATTGGGTTTAGCTGGATTTGCAGTTCGGGCAGGAGTTCGTAGTGTTTTAGGGAGTTTATGGA GGGTAGATGATGCCTCGACAGCAGAGTTAATGAAACAATTTTATGAAGAATTATTGCAGTTGCAGTCTGATACTTCACAG CAGTCTAATAGTTCAGAACTGAGAAAGGCAGAAGCACTACGTCAAGTTCAAATTAAGTTTATCAAAGGAGAAATTCAACC AGAATACCAGCAACCTTATTATTGGTCACCATTTATTCTTGTTGGTAATTGGTTATAA
Upstream 100 bases:
>100_bases TATGACACACCAGTTGAAAGTAGTTGAAAGTAGTTCCGAAAGTAGAACGAAGTGAAACCCAACACACCCTTTATTGTTTA GATATTTATATCTATTTATT
Downstream 100 bases:
>100_bases TAATACAGGGAAAAGGCGAGACTTTTGTGCCTCAGTATTCCACCAAACAACTTTGGTACTAAAAATACAACTTATCGCTC CGCCAAAATGCCCTGACTAA
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Domain Protein; Haemagglutination Activity Domain Protein; Filamentous Haemagglutinin Outer Membrane Protein; Tetratricopeptide Repeat Family; Filamentous Hemagglutinin Family Outer Membrane Protein; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide TPR_2 Repeat Protein; Filamentous Haemagglutinin Family N-Terminal Domain Protein; Tetratricopeptide Region; WD-40 Repeat-Containing Protein; Tetratricopeptide Domain Protein; TPR Domain-Containing Protein; Tetratricopeptide Tpr_1 Repeat-Containing Protein; Kinesin Light Chain; Tetratricopeptide Repeat-Containing Protein; Peptidase Domain-Containing Protein; Hemagglutination Activity Domain-Containing Protein; Peptidase Domain Protein; Peptidase-Like; Fis Family Transcriptional Regulator
Number of amino acids: Translated: 845; Mature: 845
Protein sequence:
>845_residues MKIIKLLAITLLSFCITVGINVLPPTLAESSATHLVQEGTQLLQQGKAEAALEIWQKAEELYRQNQNQTGIIGTKINQAQ ALTSLGFHERSCNTVLKAFGNDLECARLTENDLENVLEKFQTSNTSLNFQGLQILGNGLLAFGKLELSEKVLEASYKWVN SNNTKAQLLISLGNNRLSQAQNIAVDRRSGKDERALRTLVDQSLSNYQEAASISTDKSVQIQGTINNLSLLVKFTKEIGD LDTYVQFQIETLPEIIDFLNQINPTPKSIRARIKLAEIFTNIEEIKDQSAFVEFQTNITKLTPPSELLNQAIEEAKDINN FRLEAYGIGTQAKFNIKKGNLEKALKLTNKALLTAQKVSAYDIVYQLQEQLGDILIKQGNYSEALLADKSAFNTLQVLRQ DLVVLNRDIQFNFRDSIEPLYRKLLGLLLQPELGLNQPNVANIKVAVEVIESLQLAELDNFFQDACVRAQDINFDEIDQN AAVIYPILFEDRLSVILKLPGTDNFRYASFSESNFKAIDRAINGKINQYIKEQTPMDRRIVKGGKRELNKLYQWLIKPFE AYLEIDDEYDTSQIKTLVFVLEGALRNIPMSALYDSERERYLVERYAIAVAPSLQLLPPKVLLEGKLQVLIAGTDKKAPS YGEKYNPLKNVKQELESIKKIIPKSETLADEKFTAINIQDQINSVPFNIVHIATHGQFSSNIEETAIFAWDKPINVKDFE QLLQSENLQRSDRAIELLILSACQTAIGDQRAALGLAGFAVRAGVRSVLGSLWRVDDASTAELMKQFYEELLQLQSDTSQ QSNSSELRKAEALRQVQIKFIKGEIQPEYQQPYYWSPFILVGNWL
Sequences:
>Translated_845_residues MKIIKLLAITLLSFCITVGINVLPPTLAESSATHLVQEGTQLLQQGKAEAALEIWQKAEELYRQNQNQTGIIGTKINQAQ ALTSLGFHERSCNTVLKAFGNDLECARLTENDLENVLEKFQTSNTSLNFQGLQILGNGLLAFGKLELSEKVLEASYKWVN SNNTKAQLLISLGNNRLSQAQNIAVDRRSGKDERALRTLVDQSLSNYQEAASISTDKSVQIQGTINNLSLLVKFTKEIGD LDTYVQFQIETLPEIIDFLNQINPTPKSIRARIKLAEIFTNIEEIKDQSAFVEFQTNITKLTPPSELLNQAIEEAKDINN FRLEAYGIGTQAKFNIKKGNLEKALKLTNKALLTAQKVSAYDIVYQLQEQLGDILIKQGNYSEALLADKSAFNTLQVLRQ DLVVLNRDIQFNFRDSIEPLYRKLLGLLLQPELGLNQPNVANIKVAVEVIESLQLAELDNFFQDACVRAQDINFDEIDQN AAVIYPILFEDRLSVILKLPGTDNFRYASFSESNFKAIDRAINGKINQYIKEQTPMDRRIVKGGKRELNKLYQWLIKPFE AYLEIDDEYDTSQIKTLVFVLEGALRNIPMSALYDSERERYLVERYAIAVAPSLQLLPPKVLLEGKLQVLIAGTDKKAPS YGEKYNPLKNVKQELESIKKIIPKSETLADEKFTAINIQDQINSVPFNIVHIATHGQFSSNIEETAIFAWDKPINVKDFE QLLQSENLQRSDRAIELLILSACQTAIGDQRAALGLAGFAVRAGVRSVLGSLWRVDDASTAELMKQFYEELLQLQSDTSQ QSNSSELRKAEALRQVQIKFIKGEIQPEYQQPYYWSPFILVGNWL >Mature_845_residues MKIIKLLAITLLSFCITVGINVLPPTLAESSATHLVQEGTQLLQQGKAEAALEIWQKAEELYRQNQNQTGIIGTKINQAQ ALTSLGFHERSCNTVLKAFGNDLECARLTENDLENVLEKFQTSNTSLNFQGLQILGNGLLAFGKLELSEKVLEASYKWVN SNNTKAQLLISLGNNRLSQAQNIAVDRRSGKDERALRTLVDQSLSNYQEAASISTDKSVQIQGTINNLSLLVKFTKEIGD LDTYVQFQIETLPEIIDFLNQINPTPKSIRARIKLAEIFTNIEEIKDQSAFVEFQTNITKLTPPSELLNQAIEEAKDINN FRLEAYGIGTQAKFNIKKGNLEKALKLTNKALLTAQKVSAYDIVYQLQEQLGDILIKQGNYSEALLADKSAFNTLQVLRQ DLVVLNRDIQFNFRDSIEPLYRKLLGLLLQPELGLNQPNVANIKVAVEVIESLQLAELDNFFQDACVRAQDINFDEIDQN AAVIYPILFEDRLSVILKLPGTDNFRYASFSESNFKAIDRAINGKINQYIKEQTPMDRRIVKGGKRELNKLYQWLIKPFE AYLEIDDEYDTSQIKTLVFVLEGALRNIPMSALYDSERERYLVERYAIAVAPSLQLLPPKVLLEGKLQVLIAGTDKKAPS YGEKYNPLKNVKQELESIKKIIPKSETLADEKFTAINIQDQINSVPFNIVHIATHGQFSSNIEETAIFAWDKPINVKDFE QLLQSENLQRSDRAIELLILSACQTAIGDQRAALGLAGFAVRAGVRSVLGSLWRVDDASTAELMKQFYEELLQLQSDTSQ QSNSSELRKAEALRQVQIKFIKGEIQPEYQQPYYWSPFILVGNWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 95269; Mature: 95269
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIKLLAITLLSFCITVGINVLPPTLAESSATHLVQEGTQLLQQGKAEAALEIWQKAEE CHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LYRQNQNQTGIIGTKINQAQALTSLGFHERSCNTVLKAFGNDLECARLTENDLENVLEKF HHHCCCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHH QTSNTSLNFQGLQILGNGLLAFGKLELSEKVLEASYKWVNSNNTKAQLLISLGNNRLSQA HCCCCCCCCCHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHH QNIAVDRRSGKDERALRTLVDQSLSNYQEAASISTDKSVQIQGTINNLSLLVKFTKEIGD HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCC LDTYVQFQIETLPEIIDFLNQINPTPKSIRARIKLAEIFTNIEEIKDQSAFVEFQTNITK CHHHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCC LTPPSELLNQAIEEAKDINNFRLEAYGIGTQAKFNIKKGNLEKALKLTNKALLTAQKVSA CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH YDIVYQLQEQLGDILIKQGNYSEALLADKSAFNTLQVLRQDLVVLNRDIQFNFRDSIEPL HHHHHHHHHHHHHHEECCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHH YRKLLGLLLQPELGLNQPNVANIKVAVEVIESLQLAELDNFFQDACVRAQDINFDEIDQN HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC AAVIYPILFEDRLSVILKLPGTDNFRYASFSESNFKAIDRAINGKINQYIKEQTPMDRRI CEEEEEEEHHCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHH VKGGKRELNKLYQWLIKPFEAYLEIDDEYDTSQIKTLVFVLEGALRNIPMSALYDSERER HCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHH YLVERYAIAVAPSLQLLPPKVLLEGKLQVLIAGTDKKAPSYGEKYNPLKNVKQELESIKK HHHHHHHHHCCCCCCCCCCHHEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH IIPKSETLADEKFTAINIQDQINSVPFNIVHIATHGQFSSNIEETAIFAWDKPINVKDFE HCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHH QLLQSENLQRSDRAIELLILSACQTAIGDQRAALGLAGFAVRAGVRSVLGSLWRVDDAST HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AELMKQFYEELLQLQSDTSQQSNSSELRKAEALRQVQIKFIKGEIQPEYQQPYYWSPFIL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCEEE VGNWL ECCCC >Mature Secondary Structure MKIIKLLAITLLSFCITVGINVLPPTLAESSATHLVQEGTQLLQQGKAEAALEIWQKAEE CHHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LYRQNQNQTGIIGTKINQAQALTSLGFHERSCNTVLKAFGNDLECARLTENDLENVLEKF HHHCCCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHH QTSNTSLNFQGLQILGNGLLAFGKLELSEKVLEASYKWVNSNNTKAQLLISLGNNRLSQA HCCCCCCCCCHHHHHCCCHHEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHH QNIAVDRRSGKDERALRTLVDQSLSNYQEAASISTDKSVQIQGTINNLSLLVKFTKEIGD HHHHEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHCC LDTYVQFQIETLPEIIDFLNQINPTPKSIRARIKLAEIFTNIEEIKDQSAFVEFQTNITK CHHHHEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCC LTPPSELLNQAIEEAKDINNFRLEAYGIGTQAKFNIKKGNLEKALKLTNKALLTAQKVSA CCCHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHH YDIVYQLQEQLGDILIKQGNYSEALLADKSAFNTLQVLRQDLVVLNRDIQFNFRDSIEPL HHHHHHHHHHHHHHEECCCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHHH YRKLLGLLLQPELGLNQPNVANIKVAVEVIESLQLAELDNFFQDACVRAQDINFDEIDQN HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC AAVIYPILFEDRLSVILKLPGTDNFRYASFSESNFKAIDRAINGKINQYIKEQTPMDRRI CEEEEEEEHHCCEEEEEECCCCCCCEEECCCCCHHHHHHHHHCCHHHHHHHHCCCHHHHH VKGGKRELNKLYQWLIKPFEAYLEIDDEYDTSQIKTLVFVLEGALRNIPMSALYDSERER HCCCHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCHHHH YLVERYAIAVAPSLQLLPPKVLLEGKLQVLIAGTDKKAPSYGEKYNPLKNVKQELESIKK HHHHHHHHHCCCCCCCCCCHHEECCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH IIPKSETLADEKFTAINIQDQINSVPFNIVHIATHGQFSSNIEETAIFAWDKPINVKDFE HCCCCCCCCCCCEEEEEEHHHHCCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHH QLLQSENLQRSDRAIELLILSACQTAIGDQRAALGLAGFAVRAGVRSVLGSLWRVDDAST HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH AELMKQFYEELLQLQSDTSQQSNSSELRKAEALRQVQIKFIKGEIQPEYQQPYYWSPFIL HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCEECCCEEE VGNWL ECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA