| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is phoP [H]
Identifier: 113476774
GI number: 113476774
Start: 4981509
End: 4981874
Strand: Reverse
Name: phoP [H]
Synonym: Tery_3248
Alternate gene names: 113476774
Gene position: 4981874-4981509 (Counterclockwise)
Preceding gene: 113476775
Following gene: 113476773
Centisome position: 64.28
GC content: 38.52
Gene sequence:
>366_bases ATGAGCAAAGTTCTAGTGGTAGAAGATAGCGTTACCCAAAGAGAAATGATATCACAGCTTCTCAAAAATAGTGGATTAGC AGTTACCGTTGCTAATGACGGAGTAGAAGCTTTGGGGCGACTAAAAAATACTAAACCCGATATAGTAGTATTAGATATTG TGATGCCAAAAATGAATGGTTATGAAGTCTGTAGGAGAATAAAATCCGATCCTCAAACTAAGCATATTCCAGTAGTTATG TGTTCTTCAAAGGGAGAAGAGTTTGATCGTTACTGGGGCTTAAAACAAGGGGCAGATGCCTATATTGCTAAACCATTCCA GCCCACAGAACTAGTGGGAACAGTTAAGCAATTATTAAGACGCTAA
Upstream 100 bases:
>100_bases AATTTAGGTAAGCCCAAAAATCAAAAAATCGGAAAATCTTAAGAAATACTTATACTTTAAACTATTAATCAATCCCAGCC AAAGCTATCAGGAAAAAAAA
Downstream 100 bases:
>100_bases ACTTAAGAATCTATGATAGGCAATGAAGATTTTTTACCAAGCCAAGGTATAGGGATCCAAGAATTAGAAAATCCTGAAGG TGAACAACATTTGCGATTTT
Product: response regulator receiver protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNGYEVCRRIKSDPQTKHIPVVM CSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLRR
Sequences:
>Translated_121_residues MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNGYEVCRRIKSDPQTKHIPVVM CSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLRR >Mature_120_residues SKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNGYEVCRRIKSDPQTKHIPVVMC SSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLRR
Specific function: Member of the two-component regulatory system phoP/phoR involved in the regulation of alkaline phosphatase genes phoA and phoB and of phosphodiesterase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=119, Percent_Identity=41.1764705882353, Blast_Score=101, Evalue=2e-23, Organism=Escherichia coli, GI1788394, Length=119, Percent_Identity=37.8151260504202, Blast_Score=93, Evalue=5e-21, Organism=Escherichia coli, GI1789809, Length=121, Percent_Identity=40.495867768595, Blast_Score=92, Evalue=1e-20, Organism=Escherichia coli, GI1790860, Length=118, Percent_Identity=36.4406779661017, Blast_Score=89, Evalue=8e-20, Organism=Escherichia coli, GI2367329, Length=121, Percent_Identity=37.1900826446281, Blast_Score=81, Evalue=2e-17, Organism=Escherichia coli, GI1786784, Length=119, Percent_Identity=33.6134453781513, Blast_Score=80, Evalue=3e-17, Organism=Escherichia coli, GI1786911, Length=121, Percent_Identity=33.8842975206612, Blast_Score=74, Evalue=4e-15, Organism=Escherichia coli, GI87082012, Length=119, Percent_Identity=30.2521008403361, Blast_Score=73, Evalue=6e-15, Organism=Escherichia coli, GI1790863, Length=118, Percent_Identity=31.3559322033898, Blast_Score=71, Evalue=2e-14, Organism=Escherichia coli, GI1788191, Length=120, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=7e-14, Organism=Escherichia coli, GI1787375, Length=119, Percent_Identity=31.0924369747899, Blast_Score=67, Evalue=3e-13, Organism=Escherichia coli, GI1787229, Length=119, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=6e-12, Organism=Escherichia coli, GI1788550, Length=120, Percent_Identity=30, Blast_Score=63, Evalue=6e-12, Organism=Escherichia coli, GI1789402, Length=119, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=2e-11, Organism=Escherichia coli, GI145693157, Length=102, Percent_Identity=33.3333333333333, Blast_Score=60, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 13518; Mature: 13387
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNG CCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCH YEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLR HHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHC R C >Mature Secondary Structure SKVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMNG CCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCEEEEEEECCCCCH YEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLLR HHHHHHHHCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHC R C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1454550; 3036763; 9387221; 9384377; 8045898; 3142862 [H]