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The map label for this gene is ybiA [H]

Identifier: 113476072

GI number: 113476072

Start: 3772422

End: 3772862

Strand: Direct

Name: ybiA [H]

Synonym: Tery_2448

Alternate gene names: 113476072

Gene position: 3772422-3772862 (Clockwise)

Preceding gene: 113476071

Following gene: 113476073

Centisome position: 48.68

GC content: 40.14

Gene sequence:

>441_bases
ATGACTATTTACTTTTTTGATGAAACAGAACAGCCTTATGGTTGTTTCTCCAACTTTTCCCCCCACGGTTTTGAACTAGA
TGGACTTTGGTGGCCAACTTCAGAGCATTATTTCCAAGCCCAAAAATTTTTGGGGGTTCAGCATCTTGAAGAAATTAGAT
GGGCTAAAACTCCTGCAGGTGCTGCTAAAATGGGACGAGAGCGTAGTCGTCCCCTCCGCAAAGACTGGGAGGAAATAAAA
GAGGATGTGATGGAGCGAGGTTTACTTTGTAAATTTCAAAGCCATAAAGATATTGGCGAAATTCTTCTGAGTACCAAGGA
TGAGTTAATAGTAGAAAACGCTCCTGAAGATTATTATTGGGGATGTGGTAAAGATGGGAGTGGTAAAAATCGTTTGGGAG
AGATTTTAATGAAAGTGCGCAATAGGTTACAGAATAATTAA

Upstream 100 bases:

>100_bases
ACAAAAAAATAAACTTCAGTACTTCAAACTTTTGGCTGAAGCTCAAGTTTATATTAACGAAGTTCCTCCGAAGGAGGCTA
ACTGATAACTGATAACCAAA

Downstream 100 bases:

>100_bases
TAATTATAGGAACCCATGAGGATGGTAAGGTACAGTTGAAAATTAATCTTTATCTTTGTAAGAAAAGTATCCCACTTGTT
GCCGGCTCGAAAGCTGTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTIYFFDETEQPYGCFSNFSPHGFELDGLWWPTSEHYFQAQKFLGVQHLEEIRWAKTPAGAAKMGRERSRPLRKDWEEIK
EDVMERGLLCKFQSHKDIGEILLSTKDELIVENAPEDYYWGCGKDGSGKNRLGEILMKVRNRLQNN

Sequences:

>Translated_146_residues
MTIYFFDETEQPYGCFSNFSPHGFELDGLWWPTSEHYFQAQKFLGVQHLEEIRWAKTPAGAAKMGRERSRPLRKDWEEIK
EDVMERGLLCKFQSHKDIGEILLSTKDELIVENAPEDYYWGCGKDGSGKNRLGEILMKVRNRLQNN
>Mature_145_residues
TIYFFDETEQPYGCFSNFSPHGFELDGLWWPTSEHYFQAQKFLGVQHLEEIRWAKTPAGAAKMGRERSRPLRKDWEEIKE
DVMERGLLCKFQSHKDIGEILLSTKDELIVENAPEDYYWGCGKDGSGKNRLGEILMKVRNRLQNN

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=142, Percent_Identity=51.4084507042254, Blast_Score=150, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 17107; Mature: 16975

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIYFFDETEQPYGCFSNFSPHGFELDGLWWPTSEHYFQAQKFLGVQHLEEIRWAKTPAG
CEEEEECCCCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
AAKMGRERSRPLRKDWEEIKEDVMERGLLCKFQSHKDIGEILLSTKDELIVENAPEDYYW
HHHHCHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCHHEECCCCCCCCC
GCGKDGSGKNRLGEILMKVRNRLQNN
CCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIYFFDETEQPYGCFSNFSPHGFELDGLWWPTSEHYFQAQKFLGVQHLEEIRWAKTPAG
EEEEECCCCCCCCCCCCCCCCCEEECCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
AAKMGRERSRPLRKDWEEIKEDVMERGLLCKFQSHKDIGEILLSTKDELIVENAPEDYYW
HHHHCHHHCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHCCCCHHEECCCCCCCCC
GCGKDGSGKNRLGEILMKVRNRLQNN
CCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]