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The map label for this gene is ctpA [H]

Identifier: 113476036

GI number: 113476036

Start: 3714164

End: 3715468

Strand: Direct

Name: ctpA [H]

Synonym: Tery_2406

Alternate gene names: 113476036

Gene position: 3714164-3715468 (Clockwise)

Preceding gene: 113476033

Following gene: 113476040

Centisome position: 47.92

GC content: 40.54

Gene sequence:

>1305_bases
ATGAACATAGCTTCAATACACTCTCTTTTTAAAAATATTTTATATAGTGGAGCGATCGCCACAACAGCAGCTATATCTTT
ATTGGCCCCTAGCTTAAGTAAACCTGCTGAAGCAAATTTAGAAAATAGCCCCAAAGTAGTTTTGGACGAAGCATGGCAAA
TTGTCAACCGCGAGTATGTTGATGGTAGTTTTAATCATACAGACTGGAAAGCTACTCGCAAAAGTTTATTAGAGAAAAAC
TATACTTCCCAGGAAAAAGCTTACGAGGCATTAAGGCAAGCTCTAGACCAACTCAATGATCCTTATACTCGTTTTTTAGA
CCCAGAACAGTTTAAAGCTCTAACGAGTCAAACATCAGGAGAAATGTCTGGAGTGGGAATGCAACTGAAGCAAGAAGAAC
TTACCAAGACGATCGTTGTAGTAGACGTTGTGGAAAATTCTCCAGCGATGAAGGGAGGTTTATTACCAGGAGATCAAATT
CAAGAAATTGATGGTAAATCTACTTCTGATTTAAGTGTATCGGCAGCGGCTAAACTGATTCGAGGTGATGTGGGTACAAA
GGTAATGCTAGGAGTTATTCGCCCTGGAGATAGGGAATTTGAGGTGACTTTGACAAGGGCAAGAATTGAATTACAGGCAG
TTCGTTACGATCTCAAGCAGGAAAAAAATCAACGTATTGGGTATATCCGTTTACAAGAATTTAGCGCCCATGCTGGAGAA
CAGATGCAAAGAGCAATAGAGAAATTGAATAATCAAAATCCTGATGGTTATGTTTTAGACTTACGGGGCAACCCAGGGGG
TTTATTGCGTATTAGTATAGATATTGCTAGGATGTGGATGGATAAAGGTGCTATTGTCAGCACTGTAGACCGAGATGGTG
ACAGACAAGAAGTGTTGGCAGACCGTTCTGCTTTGACTGATAAACCAATAGTGGTTTTAGTAGATGGTGACTCGGCAAGT
GCTAGTGAAATTCTGGCAGGAGCGCTCAAAGATAATGGTCGTGCTACAATTATAGGGGATCAGACTTTTGGGAAAGCTTT
GGTACAGTCGGTGCATTCGTTATCAGATGGTTCTGGTTTGGCTGTAACTATTGCTCACTACTATACTCCGAAAGGAACTG
ATATTAGTAAAAAAGGTGTGACTCCTGATGTGGTTCTTAATTTGACGGACTCTCAAAAACGACGCTTATATCGGCGTCCA
GAAGCGATCGCGACTAGTTCTGACCCCTATTATGCTCGAGCTATTAATCTTTTGAGAAATGAAGTATTGTTAAGTCCATT
GATCTTAGGGGAACAAGAAAATTAA

Upstream 100 bases:

>100_bases
CTTACAGATATAATGGTTTATATTCTAATATAGATTTACTGTAAAGTATCATAAGCTTAGTCGAAAAGTCAACTAAATAT
CTAATTACCAATAAAAATCA

Downstream 100 bases:

>100_bases
ATTAATAAGTGTTGATTTGATTTAAGGTTCTCCAGGTGCTCGCTGATCCAGGTTTAATTTTTACGCAACTGCAAAACTAA
GTGAACTAATTCCGGTAGGA

Product: C-terminal processing peptidase-2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MNIASIHSLFKNILYSGAIATTAAISLLAPSLSKPAEANLENSPKVVLDEAWQIVNREYVDGSFNHTDWKATRKSLLEKN
YTSQEKAYEALRQALDQLNDPYTRFLDPEQFKALTSQTSGEMSGVGMQLKQEELTKTIVVVDVVENSPAMKGGLLPGDQI
QEIDGKSTSDLSVSAAAKLIRGDVGTKVMLGVIRPGDREFEVTLTRARIELQAVRYDLKQEKNQRIGYIRLQEFSAHAGE
QMQRAIEKLNNQNPDGYVLDLRGNPGGLLRISIDIARMWMDKGAIVSTVDRDGDRQEVLADRSALTDKPIVVLVDGDSAS
ASEILAGALKDNGRATIIGDQTFGKALVQSVHSLSDGSGLAVTIAHYYTPKGTDISKKGVTPDVVLNLTDSQKRRLYRRP
EAIATSSDPYYARAINLLRNEVLLSPLILGEQEN

Sequences:

>Translated_434_residues
MNIASIHSLFKNILYSGAIATTAAISLLAPSLSKPAEANLENSPKVVLDEAWQIVNREYVDGSFNHTDWKATRKSLLEKN
YTSQEKAYEALRQALDQLNDPYTRFLDPEQFKALTSQTSGEMSGVGMQLKQEELTKTIVVVDVVENSPAMKGGLLPGDQI
QEIDGKSTSDLSVSAAAKLIRGDVGTKVMLGVIRPGDREFEVTLTRARIELQAVRYDLKQEKNQRIGYIRLQEFSAHAGE
QMQRAIEKLNNQNPDGYVLDLRGNPGGLLRISIDIARMWMDKGAIVSTVDRDGDRQEVLADRSALTDKPIVVLVDGDSAS
ASEILAGALKDNGRATIIGDQTFGKALVQSVHSLSDGSGLAVTIAHYYTPKGTDISKKGVTPDVVLNLTDSQKRRLYRRP
EAIATSSDPYYARAINLLRNEVLLSPLILGEQEN
>Mature_434_residues
MNIASIHSLFKNILYSGAIATTAAISLLAPSLSKPAEANLENSPKVVLDEAWQIVNREYVDGSFNHTDWKATRKSLLEKN
YTSQEKAYEALRQALDQLNDPYTRFLDPEQFKALTSQTSGEMSGVGMQLKQEELTKTIVVVDVVENSPAMKGGLLPGDQI
QEIDGKSTSDLSVSAAAKLIRGDVGTKVMLGVIRPGDREFEVTLTRARIELQAVRYDLKQEKNQRIGYIRLQEFSAHAGE
QMQRAIEKLNNQNPDGYVLDLRGNPGGLLRISIDIARMWMDKGAIVSTVDRDGDRQEVLADRSALTDKPIVVLVDGDSAS
ASEILAGALKDNGRATIIGDQTFGKALVQSVHSLSDGSGLAVTIAHYYTPKGTDISKKGVTPDVVLNLTDSQKRRLYRRP
EAIATSSDPYYARAINLLRNEVLLSPLILGEQEN

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=329, Percent_Identity=31.0030395136778, Blast_Score=136, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47583; Mature: 47583

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIASIHSLFKNILYSGAIATTAAISLLAPSLSKPAEANLENSPKVVLDEAWQIVNREYV
CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHC
DGSFNHTDWKATRKSLLEKNYTSQEKAYEALRQALDQLNDPYTRFLDPEQFKALTSQTSG
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCC
EMSGVGMQLKQEELTKTIVVVDVVENSPAMKGGLLPGDQIQEIDGKSTSDLSVSAAAKLI
CCCCCCCCHHHHHHCEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
RGDVGTKVMLGVIRPGDREFEVTLTRARIELQAVRYDLKQEKNQRIGYIRLQEFSAHAGE
HCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
QMQRAIEKLNNQNPDGYVLDLRGNPGGLLRISIDIARMWMDKGAIVSTVDRDGDRQEVLA
HHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHCCCCEEEEECCCCCHHHHHH
DRSALTDKPIVVLVDGDSASASEILAGALKDNGRATIIGDQTFGKALVQSVHSLSDGSGL
HHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCCE
AVTIAHYYTPKGTDISKKGVTPDVVLNLTDSQKRRLYRRPEAIATSSDPYYARAINLLRN
EEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
EVLLSPLILGEQEN
HHHHHHHHCCCCCC
>Mature Secondary Structure
MNIASIHSLFKNILYSGAIATTAAISLLAPSLSKPAEANLENSPKVVLDEAWQIVNREYV
CCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHC
DGSFNHTDWKATRKSLLEKNYTSQEKAYEALRQALDQLNDPYTRFLDPEQFKALTSQTSG
CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCC
EMSGVGMQLKQEELTKTIVVVDVVENSPAMKGGLLPGDQIQEIDGKSTSDLSVSAAAKLI
CCCCCCCCHHHHHHCEEEEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
RGDVGTKVMLGVIRPGDREFEVTLTRARIELQAVRYDLKQEKNQRIGYIRLQEFSAHAGE
HCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHH
QMQRAIEKLNNQNPDGYVLDLRGNPGGLLRISIDIARMWMDKGAIVSTVDRDGDRQEVLA
HHHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEHHHHHHHCCCCEEEEECCCCCHHHHHH
DRSALTDKPIVVLVDGDSASASEILAGALKDNGRATIIGDQTFGKALVQSVHSLSDGSGL
HHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCCCE
AVTIAHYYTPKGTDISKKGVTPDVVLNLTDSQKRRLYRRPEAIATSSDPYYARAINLLRN
EEEEEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
EVLLSPLILGEQEN
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]