Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113476023

Identifier: 113476023

GI number: 113476023

Start: 3696966

End: 3698120

Strand: Direct

Name: 113476023

Synonym: Tery_2393

Alternate gene names: NA

Gene position: 3696966-3698120 (Clockwise)

Preceding gene: 113476022

Following gene: 113476025

Centisome position: 47.7

GC content: 40.95

Gene sequence:

>1155_bases
ATGAGAACAATTGCTGAAATTAACCACAAAATCTCCCAGAAAAAAGCTGTTGTCTGGACAATAACAGAACTCAAAGCCAG
AATTACCGAAACAAGCATTACCCAAGCTGCAAAAGAAGTTGATGTAATTACAACTGGCGCTTTTGAGCCAATGGAGTCAT
CTGGAGCCATCATCAACTTGGGACATACTGATCCCCCCATCAAAATTCGCTCCTGTTGGCTAGATAGTGTCCCTGCTTAC
TCAGGCTTTGGAGCTGTAGATTTGTACCTTGGGGCAACTCAAATAGCTGAAGATACTGAAGAATTTAAAGAACGAGGTGG
CGGCCATGTAATCGAAGACCTAATCGCAGGTAAACCTGTTCACCTGAGAGCAATTGGTCAAGTAACAGATTGTTATCCTC
GAAGTACTTTTGAAACTACTATTACTCGTGAGACAATTAACCAATTTTATTTATTTAACCCACGAAATTTATATCAAAAT
TTTATAGTTGGTGTGAATGGTGGCGATCGCCCTCTGTTTACTTATCTTGGTCCTCTAATGCCCAACTTAGGTAATGCAGT
TTATTCTAACTCTGGTGCTATTTCCCCATTATTCAATGACCCAGACTTAGAAATAATTGGTGTTGGTACCCGGATATTTT
TGGGTGGTGGTATTGGGTATATCACTTGGGAAGGTACTCAGCACTTTCCCCTACAAAAACGTCTTTCTAATCGAACCCCT
ATTGGACCTGCTGCGACTTTAGCCTTAATTGGAGATGCCAAACAAATGCAACCTCAATGGGTGCGTGGTTGTTATTTTAA
AAATTACGGTCCATCAATTATGTTAGGTGTAGGAATTCCTCTACCCGTTTTGAATGAAAAAGTAGTAGCTAACTGTTCTA
TTCAAGACCAAGATATTGTAGCGCCAGTTGTAGATTTTTCTATTCCCCGGCGGGTGCGCCCAACTTTTGGTCTAGTGAGT
TATGCTCAACTCAAATCTGGTCGGATAAAAATAGAGGGCAAACTTGTGAGGAGTGCCCCCCTTGCAAGTATCTTTCTATC
TCATCAAATTGCCTTGGAGCTAAAAGAATGGATCGAAGCAGGAGAATTTACTCTAACTGAATCAGTTGCTCAACTTCCGA
TGGATCGAACTTTCTTACCATTTCTGGAACGTTAA

Upstream 100 bases:

>100_bases
GCGAAGGAGGCTTTAACACAAATTCTTCAGTAAATATTTTTCCTTGTTCCTATCTTTCAACCCATCCTTTTTACCGCCTA
TTCTTTAAAACCATCAATAG

Downstream 100 bases:

>100_bases
GTTCTCCACAAAAAAAACCGGCATTTTCCTAAACTTTACTGAAAAAATTAATTCCCTTGCTCACTTGAGTTTTGATTTCT
TTTAATTGGTTTAGGAAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY
SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN
FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP
IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS
YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER

Sequences:

>Translated_384_residues
MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY
SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN
FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP
IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS
YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER
>Mature_384_residues
MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY
SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN
FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP
IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS
YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER

Specific function: Unknown

COG id: COG1900

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR002708
- InterPro:   IPR016426
- ProDom:   PD011569 [H]

Pfam domain/function: PF00571 CBS; PF01837 DUF39 [H]

EC number: NA

Molecular weight: Translated: 42293; Mature: 42293

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINL
CCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEC
GHTDPPIKIRSCWLDSVPAYSGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPV
CCCCCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHCCCCE
HLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQNFIVGVNGGDRPLFTYLGPLM
EEEEECCHHHCCCCCCHHHHHHHHHHHHEEEECHHHHHCCEEEECCCCCCHHHHHHHHHC
PNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP
CCCCCHHCCCCCCCCCCCCCCCEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHCCCCC
IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIV
CCHHHEEEEECCHHHCCHHHHHHEEECCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC
APVVDFSIPRRVRPTFGLVSYAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEA
HHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
GEFTLTESVAQLPMDRTFLPFLER
CCEEEHHHHHHCCCCCCCHHHHCC
>Mature Secondary Structure
MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINL
CCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEC
GHTDPPIKIRSCWLDSVPAYSGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPV
CCCCCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHCCCCE
HLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQNFIVGVNGGDRPLFTYLGPLM
EEEEECCHHHCCCCCCHHHHHHHHHHHHEEEECHHHHHCCEEEECCCCCCHHHHHHHHHC
PNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP
CCCCCHHCCCCCCCCCCCCCCCEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHCCCCC
IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIV
CCHHHEEEEECCHHHCCHHHHHHEEECCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC
APVVDFSIPRRVRPTFGLVSYAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEA
HHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
GEFTLTESVAQLPMDRTFLPFLER
CCEEEHHHHHHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]