| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113476023
Identifier: 113476023
GI number: 113476023
Start: 3696966
End: 3698120
Strand: Direct
Name: 113476023
Synonym: Tery_2393
Alternate gene names: NA
Gene position: 3696966-3698120 (Clockwise)
Preceding gene: 113476022
Following gene: 113476025
Centisome position: 47.7
GC content: 40.95
Gene sequence:
>1155_bases ATGAGAACAATTGCTGAAATTAACCACAAAATCTCCCAGAAAAAAGCTGTTGTCTGGACAATAACAGAACTCAAAGCCAG AATTACCGAAACAAGCATTACCCAAGCTGCAAAAGAAGTTGATGTAATTACAACTGGCGCTTTTGAGCCAATGGAGTCAT CTGGAGCCATCATCAACTTGGGACATACTGATCCCCCCATCAAAATTCGCTCCTGTTGGCTAGATAGTGTCCCTGCTTAC TCAGGCTTTGGAGCTGTAGATTTGTACCTTGGGGCAACTCAAATAGCTGAAGATACTGAAGAATTTAAAGAACGAGGTGG CGGCCATGTAATCGAAGACCTAATCGCAGGTAAACCTGTTCACCTGAGAGCAATTGGTCAAGTAACAGATTGTTATCCTC GAAGTACTTTTGAAACTACTATTACTCGTGAGACAATTAACCAATTTTATTTATTTAACCCACGAAATTTATATCAAAAT TTTATAGTTGGTGTGAATGGTGGCGATCGCCCTCTGTTTACTTATCTTGGTCCTCTAATGCCCAACTTAGGTAATGCAGT TTATTCTAACTCTGGTGCTATTTCCCCATTATTCAATGACCCAGACTTAGAAATAATTGGTGTTGGTACCCGGATATTTT TGGGTGGTGGTATTGGGTATATCACTTGGGAAGGTACTCAGCACTTTCCCCTACAAAAACGTCTTTCTAATCGAACCCCT ATTGGACCTGCTGCGACTTTAGCCTTAATTGGAGATGCCAAACAAATGCAACCTCAATGGGTGCGTGGTTGTTATTTTAA AAATTACGGTCCATCAATTATGTTAGGTGTAGGAATTCCTCTACCCGTTTTGAATGAAAAAGTAGTAGCTAACTGTTCTA TTCAAGACCAAGATATTGTAGCGCCAGTTGTAGATTTTTCTATTCCCCGGCGGGTGCGCCCAACTTTTGGTCTAGTGAGT TATGCTCAACTCAAATCTGGTCGGATAAAAATAGAGGGCAAACTTGTGAGGAGTGCCCCCCTTGCAAGTATCTTTCTATC TCATCAAATTGCCTTGGAGCTAAAAGAATGGATCGAAGCAGGAGAATTTACTCTAACTGAATCAGTTGCTCAACTTCCGA TGGATCGAACTTTCTTACCATTTCTGGAACGTTAA
Upstream 100 bases:
>100_bases GCGAAGGAGGCTTTAACACAAATTCTTCAGTAAATATTTTTCCTTGTTCCTATCTTTCAACCCATCCTTTTTACCGCCTA TTCTTTAAAACCATCAATAG
Downstream 100 bases:
>100_bases GTTCTCCACAAAAAAAACCGGCATTTTCCTAAACTTTACTGAAAAAATTAATTCCCTTGCTCACTTGAGTTTTGATTTCT TTTAATTGGTTTAGGAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER
Sequences:
>Translated_384_residues MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER >Mature_384_residues MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINLGHTDPPIKIRSCWLDSVPAY SGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPVHLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQN FIVGVNGGDRPLFTYLGPLMPNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIVAPVVDFSIPRRVRPTFGLVS YAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEAGEFTLTESVAQLPMDRTFLPFLER
Specific function: Unknown
COG id: COG1900
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR002708 - InterPro: IPR016426 - ProDom: PD011569 [H]
Pfam domain/function: PF00571 CBS; PF01837 DUF39 [H]
EC number: NA
Molecular weight: Translated: 42293; Mature: 42293
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINL CCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEC GHTDPPIKIRSCWLDSVPAYSGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPV CCCCCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHCCCCE HLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQNFIVGVNGGDRPLFTYLGPLM EEEEECCHHHCCCCCCHHHHHHHHHHHHEEEECHHHHHCCEEEECCCCCCHHHHHHHHHC PNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP CCCCCHHCCCCCCCCCCCCCCCEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHCCCCC IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIV CCHHHEEEEECCHHHCCHHHHHHEEECCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC APVVDFSIPRRVRPTFGLVSYAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEA HHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC GEFTLTESVAQLPMDRTFLPFLER CCEEEHHHHHHCCCCCCCHHHHCC >Mature Secondary Structure MRTIAEINHKISQKKAVVWTITELKARITETSITQAAKEVDVITTGAFEPMESSGAIINL CCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEC GHTDPPIKIRSCWLDSVPAYSGFGAVDLYLGATQIAEDTEEFKERGGGHVIEDLIAGKPV CCCCCCCEEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHCCCCE HLRAIGQVTDCYPRSTFETTITRETINQFYLFNPRNLYQNFIVGVNGGDRPLFTYLGPLM EEEEECCHHHCCCCCCHHHHHHHHHHHHEEEECHHHHHCCEEEECCCCCCHHHHHHHHHC PNLGNAVYSNSGAISPLFNDPDLEIIGVGTRIFLGGGIGYITWEGTQHFPLQKRLSNRTP CCCCCHHCCCCCCCCCCCCCCCEEEEEECEEEEEECCEEEEEECCCCCCCHHHHHCCCCC IGPAATLALIGDAKQMQPQWVRGCYFKNYGPSIMLGVGIPLPVLNEKVVANCSIQDQDIV CCHHHEEEEECCHHHCCHHHHHHEEECCCCCCEEEECCCCCCCCCCCEEEECCCCCCCCC APVVDFSIPRRVRPTFGLVSYAQLKSGRIKIEGKLVRSAPLASIFLSHQIALELKEWIEA HHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCC GEFTLTESVAQLPMDRTFLPFLER CCEEEHHHHHHCCCCCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]