| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475863
Identifier: 113475863
GI number: 113475863
Start: 3464417
End: 3465613
Strand: Direct
Name: 113475863
Synonym: Tery_2222
Alternate gene names: NA
Gene position: 3464417-3465613 (Clockwise)
Preceding gene: 113475859
Following gene: 113475866
Centisome position: 44.7
GC content: 33.17
Gene sequence:
>1197_bases ATGAAAACAAAAAATATACTTTTTTTAAGTAATGGTCATGGAGAAGATGCCCATAATTGTCAAATTATTAAAGCTTTTAC AAAAATTTCTCCAGATACAAATATATCAGCTTTACCTATTGTTGGTGTTGGTAATAGTTATGAAAATTTGAATATACCAA TTATTGGTCCTCGAGTAAATATGCCATCAGGAGGATTTTTATATCTCAGTCCTTTATTATTATTTGAAGATTTGGGAAAA GGTTTAATTAGTTTAACTTGGCAGAAGTTACAAACTATTTGGACATTTGCGAAAAACTGTGATTTAATTATGGCTACTGG AGATATTGTAGTGGCAGCTATGGCTTATTCGACAAGGCTTCCTTATATGATATTTCTTTCGGCTGATTCTAGTTATTATG AAGGTCGGATTAATTTGGGTTTAATATTGCCAAAGTTACTTCATAATTCTCGATGTTTAAAGGTTTTTGCTAGGGATGCT TTGACGGCTAAAGATTTAAAAAGACAAGGAGTTACAAAAACAGAATTTGTTGGTACTCCAGTGATGGATAATTTAATTTC AACTGGAAAAAATTTACGGCTTAAAACGGAATTGTTTACTATTGCTATTTTGCCTGGTTCTCGGTTGCCGGAAGCTGGTA AAAATTTATGTTTGCTGTTGAAACTGGTTAGAGAAATTGTCAAAGTTATGGGAGTAAATGTTTGTCAGTTTCGAGCTGCA ATTGTTCCTATTTTAATGTTTGAATTAGAGGCGATCGCTATTTCTGAAGGTTGGGAATGTCAAGGAAGTAAGCTAACATT TTTTACTCAGGAATATACAATAGAAGTAATTTGTTATGAGGATGCTTTTGCAGATATTTTACAACATTCAAGTTTGGTAA TTGGTATGGCTGGAACTGCAATAGAACAAGCTGTGGGTTTAGGCAAACCTGTAATTACTATTCCTGGTGAAGGTCCTTCA TTTACCTATCGTTTTGCGGAAGCTCAAACTAGACTTTTAGGTTCTTCTGTACAGGTTATTGGTAAAAGAATGGCTAATAG TTTTATTCTCCAAGAAGCAGCTAGAAAAGTTAAAGAAATTTTGGCAGATGAAGAGTATTTACAAAGTTGCATTAATAATG GTTTAGAAAGGATGGGGAAGCCTGGTGCTAGTGAAAAAATAGCTAATTATCTTGTTAAGTATCTGAGTTCAGACTAA
Upstream 100 bases:
>100_bases CCTAAAAAATCCAAATTACAAGGTGATGAAACTACCACTAATTTTTCGTAAAAACATGGATAATTAATCCTACTCCTAAT CTTTCCTATTCTCTATTCGT
Downstream 100 bases:
>100_bases GTTTATAGGGTGAATTACTAAGTTGATATTAAGATGGCTAGAGTATTTAATATTGATGGTTTTGGGAGGGGGATTTTCAG GTTTTGCTTTCTGATGATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MKTKNILFLSNGHGEDAHNCQIIKAFTKISPDTNISALPIVGVGNSYENLNIPIIGPRVNMPSGGFLYLSPLLLFEDLGK GLISLTWQKLQTIWTFAKNCDLIMATGDIVVAAMAYSTRLPYMIFLSADSSYYEGRINLGLILPKLLHNSRCLKVFARDA LTAKDLKRQGVTKTEFVGTPVMDNLISTGKNLRLKTELFTIAILPGSRLPEAGKNLCLLLKLVREIVKVMGVNVCQFRAA IVPILMFELEAIAISEGWECQGSKLTFFTQEYTIEVICYEDAFADILQHSSLVIGMAGTAIEQAVGLGKPVITIPGEGPS FTYRFAEAQTRLLGSSVQVIGKRMANSFILQEAARKVKEILADEEYLQSCINNGLERMGKPGASEKIANYLVKYLSSD
Sequences:
>Translated_398_residues MKTKNILFLSNGHGEDAHNCQIIKAFTKISPDTNISALPIVGVGNSYENLNIPIIGPRVNMPSGGFLYLSPLLLFEDLGK GLISLTWQKLQTIWTFAKNCDLIMATGDIVVAAMAYSTRLPYMIFLSADSSYYEGRINLGLILPKLLHNSRCLKVFARDA LTAKDLKRQGVTKTEFVGTPVMDNLISTGKNLRLKTELFTIAILPGSRLPEAGKNLCLLLKLVREIVKVMGVNVCQFRAA IVPILMFELEAIAISEGWECQGSKLTFFTQEYTIEVICYEDAFADILQHSSLVIGMAGTAIEQAVGLGKPVITIPGEGPS FTYRFAEAQTRLLGSSVQVIGKRMANSFILQEAARKVKEILADEEYLQSCINNGLERMGKPGASEKIANYLVKYLSSD >Mature_398_residues MKTKNILFLSNGHGEDAHNCQIIKAFTKISPDTNISALPIVGVGNSYENLNIPIIGPRVNMPSGGFLYLSPLLLFEDLGK GLISLTWQKLQTIWTFAKNCDLIMATGDIVVAAMAYSTRLPYMIFLSADSSYYEGRINLGLILPKLLHNSRCLKVFARDA LTAKDLKRQGVTKTEFVGTPVMDNLISTGKNLRLKTELFTIAILPGSRLPEAGKNLCLLLKLVREIVKVMGVNVCQFRAA IVPILMFELEAIAISEGWECQGSKLTFFTQEYTIEVICYEDAFADILQHSSLVIGMAGTAIEQAVGLGKPVITIPGEGPS FTYRFAEAQTRLLGSSVQVIGKRMANSFILQEAARKVKEILADEEYLQSCINNGLERMGKPGASEKIANYLVKYLSSD
Specific function: Unknown
COG id: COG4370
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43743; Mature: 43743
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTKNILFLSNGHGEDAHNCQIIKAFTKISPDTNISALPIVGVGNSYENLNIPIIGPRVN CCCCEEEEEECCCCCCCCCHHEEEHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCC MPSGGFLYLSPLLLFEDLGKGLISLTWQKLQTIWTFAKNCDLIMATGDIVVAAMAYSTRL CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC PYMIFLSADSSYYEGRINLGLILPKLLHNSRCLKVFARDALTAKDLKRQGVTKTEFVGTP CEEEEEECCCCEECCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCH VMDNLISTGKNLRLKTELFTIAILPGSRLPEAGKNLCLLLKLVREIVKVMGVNVCQFRAA HHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH IVPILMFELEAIAISEGWECQGSKLTFFTQEYTIEVICYEDAFADILQHSSLVIGMAGTA HHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEEEEEEECHHHHHHHHCCCEEEEECHHH IEQAVGLGKPVITIPGEGPSFTYRFAEAQTRLLGSSVQVIGKRMANSFILQEAARKVKEI HHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADEEYLQSCINNGLERMGKPGASEKIANYLVKYLSSD HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKTKNILFLSNGHGEDAHNCQIIKAFTKISPDTNISALPIVGVGNSYENLNIPIIGPRVN CCCCEEEEEECCCCCCCCCHHEEEHHHHCCCCCCCCEEEEEECCCCCCCCCEEEECCCCC MPSGGFLYLSPLLLFEDLGKGLISLTWQKLQTIWTFAKNCDLIMATGDIVVAAMAYSTRL CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC PYMIFLSADSSYYEGRINLGLILPKLLHNSRCLKVFARDALTAKDLKRQGVTKTEFVGTP CEEEEEECCCCEECCEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCH VMDNLISTGKNLRLKTELFTIAILPGSRLPEAGKNLCLLLKLVREIVKVMGVNVCQFRAA HHHHHHHCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH IVPILMFELEAIAISEGWECQGSKLTFFTQEYTIEVICYEDAFADILQHSSLVIGMAGTA HHHHHHHHHHHEEECCCCCCCCCEEEEEEEEEEEEEEEECHHHHHHHHCCCEEEEECHHH IEQAVGLGKPVITIPGEGPSFTYRFAEAQTRLLGSSVQVIGKRMANSFILQEAARKVKEI HHHHHCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LADEEYLQSCINNGLERMGKPGASEKIANYLVKYLSSD HCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA