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The map label for this gene is 113475791

Identifier: 113475791

GI number: 113475791

Start: 3349565

End: 3351013

Strand: Direct

Name: 113475791

Synonym: Tery_2145

Alternate gene names: NA

Gene position: 3349565-3351013 (Clockwise)

Preceding gene: 113475790

Following gene: 113475792

Centisome position: 43.22

GC content: 40.44

Gene sequence:

>1449_bases
ATGACGGATCAGCCAAGCTCCCGCAAAGAACTATATGCTCGTATTCGCGAAATAGGCCGGGAAGAATTTCTCCTCGAAGA
AATGACTCGCTATGGCTTTTGGCCAGAAGGTGAAGAAATGCCTCTAGACCCTGTCGATGAAATTCAGCGTCGTGGGGAAC
TAGAACAACAACTGAAAAAACTTCGCCAAGAAAATGCCCACCTTTTTAACTTAAAGAAACTGGGTCAAGAAGCTTACAAA
CAAAGATTAGTTGAGTCACGTCGCAAACAACAAGAAACTAAAGAACTTCGGGAAAGAGAAAGACAAGAACGCGCTAAAGC
ATGGCAAGAAAAAAAAGAAAATGACATTATTTATCTAGGGGAAGAGATATCTGGAGGACTGAATAATGTTGAAGGGAATA
TCTTTCGTCTCGAAATTTACAACCTCCCTATCCTTAATACTGCCCAAGATATAGCTAATGCTATGGATATTACTGTGGGA
GAACTTAGGTTTCTGGCATTTTCCCGCCCTACTTCTACAGTTTCCCACTACATCCGTTTCAAAATTCCTAAGAAAACAGG
GGGAGAAAGGCAAATATCTGCTCCGATGCCACGTTTGAAAAATGTTCAAACTTGGATACTTGATAATATTCTCTGTAATG
TTCCCCTCCATGAAGCAGTTCATGGTTTCCGTGCCGGACATTCTATTCTTACTAATGCTGAACCTCATGTGGCTAAAGAT
GTAATTATTAATTTTGACCTAAAAAATTTTTTTCCCTCTATTTGTTACAAGCGTGTCAAAGGATTATTTTTTTCATTGGG
TTACTCTGAAGCTGCTGCTACTATTTTTGCTCTTCTTTGTACTGAACCTAATGTCGTAGTAGTAGAGTTAGACGGACAGG
TTTATTATGTAGCTCAGAGCGATCGCCACTTACCTCAAGGTTCTCCTGCTAGTCCAGCAATTACTAATATTATGTGTCGT
CGCTTGGATAAACGTCTAAGTGAAATGGCAGCCAAACTTGATTTTGTTTATACTCGTTATGCTGATGACTTGACTTTTTC
TAGTTCTGGAGATAGTCTCCGACACATTTGCAATGTTTTCCGACGTACTGAGTCTATTGTTAGTCATGAAGGGTTTACTG
TAAATAGAGAAAAGACCAGACTTCTTCGGGGCAAGTCTAGTCAACTTGAAGTTACTGGTGTTGTGGTGAATGAATTTCCG
AATATTTCTCGCAAAGAGTTGAAGAGGTTTCGGGCAACTTTATATCAGATAGAAAAGGACGGACCTCAAGGGAAAAGGTG
GGGTCATAGTGATAATGTGATAGCTGCAATAGAAGGTTTTGCTAATTTTGTGGCGATGGTCAACCCGGAAAAAGGTAGGG
AGTTAGTGAGGCGGGTGAAACAAATTAAGGAAAAATATACTGGGAGAAGGAGGCGATCGACGAAAATTTTGGAGCACGAT
GGTACTTAG

Upstream 100 bases:

>100_bases
TCCCTATTACTGGAAGTACTGTTGCCCTACGCGATATGAAAAGCCCAGTTCCTCCTCCAGGAAGCTAACCAATAAATGAT
AATTGATACTGATAACTGAA

Downstream 100 bases:

>100_bases
TTTACACCAGTTTAAGTTGTAATATTTTGCTGGCAGTTAAGACTCAAGAGTCAGGAGTCAAAATTTCAGAGGTTTTCAGT
TAAAATTTTTAGTGAAAGAT

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: Mx162-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 482; Mature: 481

Protein sequence:

>482_residues
MTDQPSSRKELYARIREIGREEFLLEEMTRYGFWPEGEEMPLDPVDEIQRRGELEQQLKKLRQENAHLFNLKKLGQEAYK
QRLVESRRKQQETKELRERERQERAKAWQEKKENDIIYLGEEISGGLNNVEGNIFRLEIYNLPILNTAQDIANAMDITVG
ELRFLAFSRPTSTVSHYIRFKIPKKTGGERQISAPMPRLKNVQTWILDNILCNVPLHEAVHGFRAGHSILTNAEPHVAKD
VIINFDLKNFFPSICYKRVKGLFFSLGYSEAAATIFALLCTEPNVVVVELDGQVYYVAQSDRHLPQGSPASPAITNIMCR
RLDKRLSEMAAKLDFVYTRYADDLTFSSSGDSLRHICNVFRRTESIVSHEGFTVNREKTRLLRGKSSQLEVTGVVVNEFP
NISRKELKRFRATLYQIEKDGPQGKRWGHSDNVIAAIEGFANFVAMVNPEKGRELVRRVKQIKEKYTGRRRRSTKILEHD
GT

Sequences:

>Translated_482_residues
MTDQPSSRKELYARIREIGREEFLLEEMTRYGFWPEGEEMPLDPVDEIQRRGELEQQLKKLRQENAHLFNLKKLGQEAYK
QRLVESRRKQQETKELRERERQERAKAWQEKKENDIIYLGEEISGGLNNVEGNIFRLEIYNLPILNTAQDIANAMDITVG
ELRFLAFSRPTSTVSHYIRFKIPKKTGGERQISAPMPRLKNVQTWILDNILCNVPLHEAVHGFRAGHSILTNAEPHVAKD
VIINFDLKNFFPSICYKRVKGLFFSLGYSEAAATIFALLCTEPNVVVVELDGQVYYVAQSDRHLPQGSPASPAITNIMCR
RLDKRLSEMAAKLDFVYTRYADDLTFSSSGDSLRHICNVFRRTESIVSHEGFTVNREKTRLLRGKSSQLEVTGVVVNEFP
NISRKELKRFRATLYQIEKDGPQGKRWGHSDNVIAAIEGFANFVAMVNPEKGRELVRRVKQIKEKYTGRRRRSTKILEHD
GT
>Mature_481_residues
TDQPSSRKELYARIREIGREEFLLEEMTRYGFWPEGEEMPLDPVDEIQRRGELEQQLKKLRQENAHLFNLKKLGQEAYKQ
RLVESRRKQQETKELRERERQERAKAWQEKKENDIIYLGEEISGGLNNVEGNIFRLEIYNLPILNTAQDIANAMDITVGE
LRFLAFSRPTSTVSHYIRFKIPKKTGGERQISAPMPRLKNVQTWILDNILCNVPLHEAVHGFRAGHSILTNAEPHVAKDV
IINFDLKNFFPSICYKRVKGLFFSLGYSEAAATIFALLCTEPNVVVVELDGQVYYVAQSDRHLPQGSPASPAITNIMCRR
LDKRLSEMAAKLDFVYTRYADDLTFSSSGDSLRHICNVFRRTESIVSHEGFTVNREKTRLLRGKSSQLEVTGVVVNEFPN
ISRKELKRFRATLYQIEKDGPQGKRWGHSDNVIAAIEGFANFVAMVNPEKGRELVRRVKQIKEKYTGRRRRSTKILEHDG
T

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 55630; Mature: 55499

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQPSSRKELYARIREIGREEFLLEEMTRYGFWPEGEEMPLDPVDEIQRRGELEQQLKK
CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
LRQENAHLFNLKKLGQEAYKQRLVESRRKQQETKELRERERQERAKAWQEKKENDIIYLG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
EEISGGLNNVEGNIFRLEIYNLPILNTAQDIANAMDITVGELRFLAFSRPTSTVSHYIRF
CHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHEEEECCCHHHHHHHHEE
KIPKKTGGERQISAPMPRLKNVQTWILDNILCNVPLHEAVHGFRAGHSILTNAEPHVAKD
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCHHHH
VIINFDLKNFFPSICYKRVKGLFFSLGYSEAAATIFALLCTEPNVVVVELDGQVYYVAQS
HEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECC
DRHLPQGSPASPAITNIMCRRLDKRLSEMAAKLDFVYTRYADDLTFSSSGDSLRHICNVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHH
RRTESIVSHEGFTVNREKTRLLRGKSSQLEVTGVVVNEFPNISRKELKRFRATLYQIEKD
HHHHHHHHCCCCEECHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
GPQGKRWGHSDNVIAAIEGFANFVAMVNPEKGRELVRRVKQIKEKYTGRRRRSTKILEHD
CCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
GT
CC
>Mature Secondary Structure 
TDQPSSRKELYARIREIGREEFLLEEMTRYGFWPEGEEMPLDPVDEIQRRGELEQQLKK
CCCCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHH
LRQENAHLFNLKKLGQEAYKQRLVESRRKQQETKELRERERQERAKAWQEKKENDIIYLG
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
EEISGGLNNVEGNIFRLEIYNLPILNTAQDIANAMDITVGELRFLAFSRPTSTVSHYIRF
CHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCHHHHHHEEEECCCHHHHHHHHEE
KIPKKTGGERQISAPMPRLKNVQTWILDNILCNVPLHEAVHGFRAGHSILTNAEPHVAKD
ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHCCCCCCHHHH
VIINFDLKNFFPSICYKRVKGLFFSLGYSEAAATIFALLCTEPNVVVVELDGQVYYVAQS
HEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECC
DRHLPQGSPASPAITNIMCRRLDKRLSEMAAKLDFVYTRYADDLTFSSSGDSLRHICNVF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHH
RRTESIVSHEGFTVNREKTRLLRGKSSQLEVTGVVVNEFPNISRKELKRFRATLYQIEKD
HHHHHHHHCCCCEECHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
GPQGKRWGHSDNVIAAIEGFANFVAMVNPEKGRELVRRVKQIKEKYTGRRRRSTKILEHD
CCCCCCCCCCCCCHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCC
GT
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2465092; 2465091 [H]