Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475712

Identifier: 113475712

GI number: 113475712

Start: 3212172

End: 3213308

Strand: Direct

Name: 113475712

Synonym: Tery_2059

Alternate gene names: NA

Gene position: 3212172-3213308 (Clockwise)

Preceding gene: 113475711

Following gene: 113475713

Centisome position: 41.45

GC content: 30.69

Gene sequence:

>1137_bases
ATGGATGAGATTGAATCTATTGAAAAACAAATTAACAATACTAAAAAAAATCTACTTCTGACTGAGGAAAGAATATCTGA
ATATCCTGAGACTACGAGTGTTCCACTAAAAGACATCAAGAATAAACGAAAGTTAGAGACTAGGTTAAAAAAATTGAGAG
CTCAATTAATAGGTCTTGATAAGCATCGCGATCGCTTAAAAGAACGTCGTGATATTCCTCCTTTACTTCCTTACTTTGTT
AATCGTAGTAGTCAACAAATTGAACTTAAAGAAGCATTAAAAAAATTGTTCAATCATCCTTATTCTCAGCCACTTTTATG
TATAATTCACGGGGATAAATTACAATGTCATGATACATTTTTTCAATTTCTTGAAAAGGAGTTTCTGCCAAAAATATTCA
AGGAAAATACCAATATAAATACAAATAATAACTATACAGAATTTATCAAAGAATACCAACTGAAATGGCCGCCGAGAAAT
ACTTCTATAGAAGACTTAAAAAATAGACTAGAACACAATTTAGTAGATACGGTACTTGACAATAAATTTGCTTCAAAAGC
AGACATAAATGAGTACCTGGCTAGTATTGGAACAGTTATTATTCACACACATTTGCTCACTGCTGATTTGCAGGAAAATT
CATCTATAATTATTGAAAAATTTATAGAATTTTGGCAAGATTGGCCTGAACTTATTCCTAATCAACATCTAATTATTTTC
TTGTTTATTAAATACAAAATTGAACCAAAACAAAACTATTTTCAGAAACTACAGAATTGGATTTTTCAGAATCTATTCAA
GAATAATTCCAACACTCGAACCGGGAATTATTCTATTCAAAAAAGTATCAAAGATTTGTCTTCCTCTAACTTTACTAAAT
TTGATAAAATTATCGGGGTAGTTCTGCCCGAACTTCAAGGAATTACGCAAACAGAAGTAGAAGACTGGGCCCGTAGGGAA
GAAGTAAAGAATTATTGGGATGAGGAAAATATTCAAGATTTAATTAATATAATTGAGGATATGTTTGAAAAATGGGAGAA
ACAGCAAGCATCTGATACTATGCCTATGTCTAATTTAGCTATAAAATTGACTGATATTTTGATGGGAAAAATACCTATCA
AGGAGGATACTGCATGA

Upstream 100 bases:

>100_bases
GTGGTTTGCTGATTTATAGCTTCCCTAATGTCATACTTATAACTGGGGAATCAAAGCTTGTATTTTTGAGTAAGAATAAC
TAAAATGACTATTAAAGTTA

Downstream 100 bases:

>100_bases
ATTTTCCATTTTACTTTGGTGACGGAAAACGGAAACCAAATAATACACCAGCTACTCTACCTGTGTCGCGACGAGCCGAA
TTTATCAAACCAGAAAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDEIESIEKQINNTKKNLLLTEERISEYPETTSVPLKDIKNKRKLETRLKKLRAQLIGLDKHRDRLKERRDIPPLLPYFV
NRSSQQIELKEALKKLFNHPYSQPLLCIIHGDKLQCHDTFFQFLEKEFLPKIFKENTNINTNNNYTEFIKEYQLKWPPRN
TSIEDLKNRLEHNLVDTVLDNKFASKADINEYLASIGTVIIHTHLLTADLQENSSIIIEKFIEFWQDWPELIPNQHLIIF
LFIKYKIEPKQNYFQKLQNWIFQNLFKNNSNTRTGNYSIQKSIKDLSSSNFTKFDKIIGVVLPELQGITQTEVEDWARRE
EVKNYWDEENIQDLINIIEDMFEKWEKQQASDTMPMSNLAIKLTDILMGKIPIKEDTA

Sequences:

>Translated_378_residues
MDEIESIEKQINNTKKNLLLTEERISEYPETTSVPLKDIKNKRKLETRLKKLRAQLIGLDKHRDRLKERRDIPPLLPYFV
NRSSQQIELKEALKKLFNHPYSQPLLCIIHGDKLQCHDTFFQFLEKEFLPKIFKENTNINTNNNYTEFIKEYQLKWPPRN
TSIEDLKNRLEHNLVDTVLDNKFASKADINEYLASIGTVIIHTHLLTADLQENSSIIIEKFIEFWQDWPELIPNQHLIIF
LFIKYKIEPKQNYFQKLQNWIFQNLFKNNSNTRTGNYSIQKSIKDLSSSNFTKFDKIIGVVLPELQGITQTEVEDWARRE
EVKNYWDEENIQDLINIIEDMFEKWEKQQASDTMPMSNLAIKLTDILMGKIPIKEDTA
>Mature_378_residues
MDEIESIEKQINNTKKNLLLTEERISEYPETTSVPLKDIKNKRKLETRLKKLRAQLIGLDKHRDRLKERRDIPPLLPYFV
NRSSQQIELKEALKKLFNHPYSQPLLCIIHGDKLQCHDTFFQFLEKEFLPKIFKENTNINTNNNYTEFIKEYQLKWPPRN
TSIEDLKNRLEHNLVDTVLDNKFASKADINEYLASIGTVIIHTHLLTADLQENSSIIIEKFIEFWQDWPELIPNQHLIIF
LFIKYKIEPKQNYFQKLQNWIFQNLFKNNSNTRTGNYSIQKSIKDLSSSNFTKFDKIIGVVLPELQGITQTEVEDWARRE
EVKNYWDEENIQDLINIIEDMFEKWEKQQASDTMPMSNLAIKLTDILMGKIPIKEDTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44888; Mature: 44888

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIESIEKQINNTKKNLLLTEERISEYPETTSVPLKDIKNKRKLETRLKKLRAQLIGLD
CCHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
KHRDRLKERRDIPPLLPYFVNRSSQQIELKEALKKLFNHPYSQPLLCIIHGDKLQCHDTF
HHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
FQFLEKEFLPKIFKENTNINTNNNYTEFIKEYQLKWPPRNTSIEDLKNRLEHNLVDTVLD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NKFASKADINEYLASIGTVIIHTHLLTADLQENSSIIIEKFIEFWQDWPELIPNQHLIIF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
LFIKYKIEPKQNYFQKLQNWIFQNLFKNNSNTRTGNYSIQKSIKDLSSSNFTKFDKIIGV
EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VLPELQGITQTEVEDWARREEVKNYWDEENIQDLINIIEDMFEKWEKQQASDTMPMSNLA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IKLTDILMGKIPIKEDTA
HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MDEIESIEKQINNTKKNLLLTEERISEYPETTSVPLKDIKNKRKLETRLKKLRAQLIGLD
CCHHHHHHHHHHHHHHHHEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCH
KHRDRLKERRDIPPLLPYFVNRSSQQIELKEALKKLFNHPYSQPLLCIIHGDKLQCHDTF
HHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH
FQFLEKEFLPKIFKENTNINTNNNYTEFIKEYQLKWPPRNTSIEDLKNRLEHNLVDTVLD
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NKFASKADINEYLASIGTVIIHTHLLTADLQENSSIIIEKFIEFWQDWPELIPNQHLIIF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
LFIKYKIEPKQNYFQKLQNWIFQNLFKNNSNTRTGNYSIQKSIKDLSSSNFTKFDKIIGV
EEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
VLPELQGITQTEVEDWARREEVKNYWDEENIQDLINIIEDMFEKWEKQQASDTMPMSNLA
HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IKLTDILMGKIPIKEDTA
HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA