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The map label for this gene is ybbK [C]

Identifier: 113475617

GI number: 113475617

Start: 3026642

End: 3027607

Strand: Direct

Name: ybbK [C]

Synonym: Tery_1952

Alternate gene names: 113475617

Gene position: 3026642-3027607 (Clockwise)

Preceding gene: 113475616

Following gene: 113475619

Centisome position: 39.05

GC content: 35.2

Gene sequence:

>966_bases
ATGCAACAGTTTTTTTTACTTGTATTTTTAGTTTTAGGTGGTTCAAGTTTAGCAGGAAGTGTCAAAGTTATTAATCAAGG
CAATGAAGCTTTGGTTGAAACTTTAGGTAGATATAACGGCAGAAAATTAGATGCTGGTTTGAAACTTATTATACCATTTT
TAGATAAAATTTCTTATCAAGAAACTATTCGTGAAAAAGTATTAGATATTAAACCTCAACCATGTATTACTAGAGATAAT
GTAGCAATTAGTGTAGATGCTGTAGTTTATTGGCGAATTATGGATATGGAGAAAGCTTACTATAAAGTAGAAAATCTCCA
ATCTGCAATGACTAATTTAGTTTTAACTCAAATTCGGGCAGAAATGGGTAAATTAGAATTAGACCAAACTTTTACAGCTC
GCACGGAAATTAATGAGGTATTACTCAGAGAATTAGACATTGCTACTGACCCTTGGGGAGTAAAAGTAACTAGGGTAGAG
TTACGAGATATTAGCCCATCAAAAGCAGTACAAGATTCTATGGAATTACAAATGACTGCAGAACGAAAAAAACGGGCAGC
AATTTTAACTTCAGAAGGGGAAAGAGATTCTGCTATTAACTCTGCCAGAGGTAGAGCAGAATCACAAGTTCTTGATGCTC
AAGCACGTCAAAAGGCAACTGTTTTAGAAGCAGAAGCACAACAAAAAGCAATTGTCTTGAAGGCTCAAGCTGAACGTCAA
TCTCAGGTATTGAAAGCTCAAGCAACTGCTGAAGCATTAGAAATTATTACTAAGACTCTCCGTAAAGACCCCAATGCAAA
GGAGGCACTCGAATTTTTATTGGCTCAAAATTATCTGGATATGGGTCAAAAAATTGGTACTAGTGAAAGTAGTAAAGTTA
TGTTTATGGACCCTCGAAATATTCCAGCAACTTTAGAAGGTATGCGTTCTATTGTGACAGACAACAAAAATTCAGTGAGC
ATTTAG

Upstream 100 bases:

>100_bases
CTTAACTCACCTCTATGATATTTGTAGTAGTTTTTAGGAAAATCCAAGTGTAGCATTAATTTAGATAAATCTTATAATTT
AGATAATTAGGAGATGAAAA

Downstream 100 bases:

>100_bases
AAGAATGGTAGTTTAGCAAAAAATTTGGTTTAAAGTCTTTCTCATAAGCAGACAATTTATTAGTTGTTTTTTTTGAATAA
ATATGTTAATATAAACTCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MQQFFLLVFLVLGGSSLAGSVKVINQGNEALVETLGRYNGRKLDAGLKLIIPFLDKISYQETIREKVLDIKPQPCITRDN
VAISVDAVVYWRIMDMEKAYYKVENLQSAMTNLVLTQIRAEMGKLELDQTFTARTEINEVLLRELDIATDPWGVKVTRVE
LRDISPSKAVQDSMELQMTAERKKRAAILTSEGERDSAINSARGRAESQVLDAQARQKATVLEAEAQQKAIVLKAQAERQ
SQVLKAQATAEALEIITKTLRKDPNAKEALEFLLAQNYLDMGQKIGTSESSKVMFMDPRNIPATLEGMRSIVTDNKNSVS
I

Sequences:

>Translated_321_residues
MQQFFLLVFLVLGGSSLAGSVKVINQGNEALVETLGRYNGRKLDAGLKLIIPFLDKISYQETIREKVLDIKPQPCITRDN
VAISVDAVVYWRIMDMEKAYYKVENLQSAMTNLVLTQIRAEMGKLELDQTFTARTEINEVLLRELDIATDPWGVKVTRVE
LRDISPSKAVQDSMELQMTAERKKRAAILTSEGERDSAINSARGRAESQVLDAQARQKATVLEAEAQQKAIVLKAQAERQ
SQVLKAQATAEALEIITKTLRKDPNAKEALEFLLAQNYLDMGQKIGTSESSKVMFMDPRNIPATLEGMRSIVTDNKNSVS
I
>Mature_321_residues
MQQFFLLVFLVLGGSSLAGSVKVINQGNEALVETLGRYNGRKLDAGLKLIIPFLDKISYQETIREKVLDIKPQPCITRDN
VAISVDAVVYWRIMDMEKAYYKVENLQSAMTNLVLTQIRAEMGKLELDQTFTARTEINEVLLRELDIATDPWGVKVTRVE
LRDISPSKAVQDSMELQMTAERKKRAAILTSEGERDSAINSARGRAESQVLDAQARQKATVLEAEAQQKAIVLKAQAERQ
SQVLKAQATAEALEIITKTLRKDPNAKEALEFLLAQNYLDMGQKIGTSESSKVMFMDPRNIPATLEGMRSIVTDNKNSVS
I

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=197, Percent_Identity=40.6091370558376, Blast_Score=165, Evalue=4e-41,
Organism=Homo sapiens, GI38016911, Length=209, Percent_Identity=33.0143540669856, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21686995, Length=195, Percent_Identity=34.3589743589744, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI221316744, Length=195, Percent_Identity=34.3589743589744, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7657615, Length=182, Percent_Identity=25.2747252747253, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786697, Length=316, Percent_Identity=35.4430379746835, Blast_Score=208, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI32564147, Length=296, Percent_Identity=34.4594594594595, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17569493, Length=190, Percent_Identity=32.1052631578947, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193209764, Length=190, Percent_Identity=32.1052631578947, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17569499, Length=193, Percent_Identity=32.6424870466321, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI71987612, Length=196, Percent_Identity=31.6326530612245, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI25153583, Length=196, Percent_Identity=31.6326530612245, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17569497, Length=199, Percent_Identity=30.1507537688442, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71987621, Length=196, Percent_Identity=31.6326530612245, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71989948, Length=184, Percent_Identity=33.1521739130435, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=33.1521739130435, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI32566490, Length=217, Percent_Identity=30.4147465437788, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193210507, Length=201, Percent_Identity=29.3532338308458, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570161, Length=201, Percent_Identity=29.3532338308458, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17570459, Length=196, Percent_Identity=30.6122448979592, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI45550506, Length=309, Percent_Identity=33.3333333333333, Blast_Score=168, Evalue=5e-42,
Organism=Drosophila melanogaster, GI45556022, Length=178, Percent_Identity=35.9550561797753, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI18860517, Length=196, Percent_Identity=32.6530612244898, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24657857, Length=201, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI62484448, Length=201, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI281365664, Length=201, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI62484274, Length=201, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI28573263, Length=219, Percent_Identity=26.9406392694064, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21356845, Length=188, Percent_Identity=28.1914893617021, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281361631, Length=191, Percent_Identity=26.1780104712042, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281361633, Length=191, Percent_Identity=26.1780104712042, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281361635, Length=132, Percent_Identity=29.5454545454545, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 35806; Mature: 35806

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQFFLLVFLVLGGSSLAGSVKVINQGNEALVETLGRYNGRKLDAGLKLIIPFLDKISYQ
CHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCEECCCHHHHHHHHHHCCHH
ETIREKVLDIKPQPCITRDNVAISVDAVVYWRIMDMEKAYYKVENLQSAMTNLVLTQIRA
HHHHHHHHCCCCCCCCCCCCEEEEEHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMGKLELDQTFTARTEINEVLLRELDIATDPWGVKVTRVELRDISPSKAVQDSMELQMTA
HHCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
ERKKRAAILTSEGERDSAINSARGRAESQVLDAQARQKATVLEAEAQQKAIVLKAQAERQ
HHHHHEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHH
SQVLKAQATAEALEIITKTLRKDPNAKEALEFLLAQNYLDMGQKIGTSESSKVMFMDPRN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
IPATLEGMRSIVTDNKNSVSI
CCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQQFFLLVFLVLGGSSLAGSVKVINQGNEALVETLGRYNGRKLDAGLKLIIPFLDKISYQ
CHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHCCCCEECCCHHHHHHHHHHCCHH
ETIREKVLDIKPQPCITRDNVAISVDAVVYWRIMDMEKAYYKVENLQSAMTNLVLTQIRA
HHHHHHHHCCCCCCCCCCCCEEEEEHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EMGKLELDQTFTARTEINEVLLRELDIATDPWGVKVTRVELRDISPSKAVQDSMELQMTA
HHCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
ERKKRAAILTSEGERDSAINSARGRAESQVLDAQARQKATVLEAEAQQKAIVLKAQAERQ
HHHHHEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHH
SQVLKAQATAEALEIITKTLRKDPNAKEALEFLLAQNYLDMGQKIGTSESSKVMFMDPRN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
IPATLEGMRSIVTDNKNSVSI
CCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]