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The map label for this gene is 113475551

Identifier: 113475551

GI number: 113475551

Start: 2877278

End: 2877805

Strand: Direct

Name: 113475551

Synonym: Tery_1883

Alternate gene names: NA

Gene position: 2877278-2877805 (Clockwise)

Preceding gene: 113475550

Following gene: 113475552

Centisome position: 37.13

GC content: 30.68

Gene sequence:

>528_bases
ATGGATAGCACTCTACCAGTTTTATACTTATTAATACTGTTACTATTATTGTCTATAACATCTATATTTGTTATCCGTCA
AATTACGAAGACAAGAAAAACAGAAAGTCAGCTTTCTAAATTGAAAGATAAACTGACAAAAGAACAGGGAACAGTAGATG
AATATTATCAACTTGCCAGTATATATTTAGAAAAAAAATTATATGTTCAAGGAATTGAACTGTTGCAAAAAGCTCTGAGA
TTAAAAGACCCAGAAAATCTAGAAAATATGGCAAAAATTTATAATGCTCTTGGTTTTACATACTTCACTCAAGAGCAGTA
TGATATTGCTATTAGGCAATATAAAGAAGCATTAAAGATAGATCCTAAATATGTGACAGCTTATAATAATTTGGGTCATG
CTTATGAGAAAAAAAAATTAACTGCTCAAGCTTTAGAAGCCTATGAGTCAGCACTGCAATATGACTCCAAAAATGATACT
GCGAAAAGACGTGCAGAATCTATGAGGAAACGTTTAACAACTTCTTGA

Upstream 100 bases:

>100_bases
ACTTAGTCCCACTGCTATTCCCCTTGACTAAAATAATCACAATAAACCACCATTAGAATACATTACCAGCTAAAATTCAA
ATTAATCCTGGGTAAAGATT

Downstream 100 bases:

>100_bases
AGTCAGAATATGGCTCATAATTACTGGATATTTTTCTTGAGTCATTGGATATTTACTTATATAAAAAGGTTGAATAGTTA
CTGTATGTGGTAGTTCTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MDSTLPVLYLLILLLLLSITSIFVIRQITKTRKTESQLSKLKDKLTKEQGTVDEYYQLASIYLEKKLYVQGIELLQKALR
LKDPENLENMAKIYNALGFTYFTQEQYDIAIRQYKEALKIDPKYVTAYNNLGHAYEKKKLTAQALEAYESALQYDSKNDT
AKRRAESMRKRLTTS

Sequences:

>Translated_175_residues
MDSTLPVLYLLILLLLLSITSIFVIRQITKTRKTESQLSKLKDKLTKEQGTVDEYYQLASIYLEKKLYVQGIELLQKALR
LKDPENLENMAKIYNALGFTYFTQEQYDIAIRQYKEALKIDPKYVTAYNNLGHAYEKKKLTAQALEAYESALQYDSKNDT
AKRRAESMRKRLTTS
>Mature_175_residues
MDSTLPVLYLLILLLLLSITSIFVIRQITKTRKTESQLSKLKDKLTKEQGTVDEYYQLASIYLEKKLYVQGIELLQKALR
LKDPENLENMAKIYNALGFTYFTQEQYDIAIRQYKEALKIDPKYVTAYNNLGHAYEKKKLTAQALEAYESALQYDSKNDT
AKRRAESMRKRLTTS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20378; Mature: 20378

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTLPVLYLLILLLLLSITSIFVIRQITKTRKTESQLSKLKDKLTKEQGTVDEYYQLAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IYLEKKLYVQGIELLQKALRLKDPENLENMAKIYNALGFTYFTQEQYDIAIRQYKEALKI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPKYVTAYNNLGHAYEKKKLTAQALEAYESALQYDSKNDTAKRRAESMRKRLTTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDSTLPVLYLLILLLLLSITSIFVIRQITKTRKTESQLSKLKDKLTKEQGTVDEYYQLAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IYLEKKLYVQGIELLQKALRLKDPENLENMAKIYNALGFTYFTQEQYDIAIRQYKEALKI
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DPKYVTAYNNLGHAYEKKKLTAQALEAYESALQYDSKNDTAKRRAESMRKRLTTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA