| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475388
Identifier: 113475388
GI number: 113475388
Start: 2604670
End: 2605401
Strand: Direct
Name: 113475388
Synonym: Tery_1712
Alternate gene names: NA
Gene position: 2604670-2605401 (Clockwise)
Preceding gene: 113475387
Following gene: 113475389
Centisome position: 33.61
GC content: 33.2
Gene sequence:
>732_bases ATGAAATTTATTGGAATAGACCTAGGTTGGCAGTCTGGAAAAAGCGGTCTTTGCTGTCTACAATACTCAGATAATAAATT AAAAATATTAGACATAGACTGCATACTAGAAATTGAAGATATTCTCAATTGGATTGATAATTTAACTCCCCTTTCAACTC CAGCTCTAATTGCCGTAGATGCTCCCACAATAATTCCTAATAAAACAGGAACTAGACTACCAGATAAACTTACTCATAAA TATTTTGGTCGTTATCATGCAGGATGTTATCCGGCAAATCTTAACCGTCCTTTTGCTCAGAGAACAGTCAAATTTGGCAT TAGTTTAGAAGCTAAAGAATTTATCCATGCACCAACCATTAAGCCTCAAAAAATAGGACGTTTTCAAATTGAAGTTTTCC CCCATCCAGCTATAGTTAATCTGTTTCAATTAGAAAAAATTTTGAAATATAAAAAAGGTAGGTTAGCCGACCGTAAATTA GAACTTTTGAAACTGCAAAAATACATTATAAATATTCTACCAACTCTAGAGCCCGCTCTAGTAATTTCCCACAACTTCCT AAATACCGAAACAATTAATAGTATCACCACTCTCAAAACTACAGAAGATAAATTAGACAGTTTAATTTGTGCTTATATTG GAGCATATTGGTGGTATTGGGGTGAAACAAAAAACTTGGTATTGGGAAATCACACAACTGGATATATAGTAGTTCCTAAA AGATTAGATTAA
Upstream 100 bases:
>100_bases CATTTTTAAACTTATTCTCTAACTATTCTGTATTTTACCTTCTACTTTCAGTAAAGAGATTTTGATAATTTTTTAAAAGT TTCTCAGTAATTTTTTTAGT
Downstream 100 bases:
>100_bases ACCCTGCTAAAGTTATGAAAGAAAATGTAGACGAACTGAAATTAGAAATAGATACTTTACATAGAGAAATAGATAGTTTA CAAAGCCAAATAGAGACACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDIDCILEIEDILNWIDNLTPLSTPALIAVDAPTIIPNKTGTRLPDKLTHK YFGRYHAGCYPANLNRPFAQRTVKFGISLEAKEFIHAPTIKPQKIGRFQIEVFPHPAIVNLFQLEKILKYKKGRLADRKL ELLKLQKYIINILPTLEPALVISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWGETKNLVLGNHTTGYIVVPK RLD
Sequences:
>Translated_243_residues MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDIDCILEIEDILNWIDNLTPLSTPALIAVDAPTIIPNKTGTRLPDKLTHK YFGRYHAGCYPANLNRPFAQRTVKFGISLEAKEFIHAPTIKPQKIGRFQIEVFPHPAIVNLFQLEKILKYKKGRLADRKL ELLKLQKYIINILPTLEPALVISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWGETKNLVLGNHTTGYIVVPK RLD >Mature_243_residues MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDIDCILEIEDILNWIDNLTPLSTPALIAVDAPTIIPNKTGTRLPDKLTHK YFGRYHAGCYPANLNRPFAQRTVKFGISLEAKEFIHAPTIKPQKIGRFQIEVFPHPAIVNLFQLEKILKYKKGRLADRKL ELLKLQKYIINILPTLEPALVISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWGETKNLVLGNHTTGYIVVPK RLD
Specific function: Unknown
COG id: COG4328
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27695; Mature: 27695
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDIDCILEIEDILNWIDNLTPLSTPALIAVD CEEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEEEEHHHHHHHHHCCCCCCCCEEEEEC APTIIPNKTGTRLPDKLTHKYFGRYHAGCYPANLNRPFAQRTVKFGISLEAKEFIHAPTI CCEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCEECHHHHHCCCCC KPQKIGRFQIEVFPHPAIVNLFQLEKILKYKKGRLADRKLELLKLQKYIINILPTLEPAL CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE VISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWGETKNLVLGNHTTGYIVVPK EEEECCCCCHHCCCEEEEECCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEECC RLD CCC >Mature Secondary Structure MKFIGIDLGWQSGKSGLCCLQYSDNKLKILDIDCILEIEDILNWIDNLTPLSTPALIAVD CEEEEEECCCCCCCCCEEEEEECCCEEEEEEEEEEEEHHHHHHHHHCCCCCCCCEEEEEC APTIIPNKTGTRLPDKLTHKYFGRYHAGCYPANLNRPFAQRTVKFGISLEAKEFIHAPTI CCEECCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHCCCEECHHHHHCCCCC KPQKIGRFQIEVFPHPAIVNLFQLEKILKYKKGRLADRKLELLKLQKYIINILPTLEPAL CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEE VISHNFLNTETINSITTLKTTEDKLDSLICAYIGAYWWYWGETKNLVLGNHTTGYIVVPK EEEECCCCCHHCCCEEEEECCHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEEEECC RLD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA