| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475325
Identifier: 113475325
GI number: 113475325
Start: 2501223
End: 2501948
Strand: Reverse
Name: 113475325
Synonym: Tery_1639
Alternate gene names: NA
Gene position: 2501948-2501223 (Counterclockwise)
Preceding gene: 113475331
Following gene: 113475322
Centisome position: 32.28
GC content: 38.02
Gene sequence:
>726_bases ATGGCTCCGGGTTTAAAATCATCAACACTAGAACTGCTAAAGCGCTTCAACCGAGCGTTTCCACAGTTTTATGAACAATT TGTTAGTAGTGATATTCAATTACAAAATTTGAAATTAGCATATCAGTTGTATAGAAGCAAACAAGCTGTAATAGAATTAA AACCAGAAAGTAGCAAAAGTGCTCTGTACTTTACCTACAGAAATCAATCATTCTTACTCAGTGATATTTTTGGAGTATTG GCTGCATATGGACTAACTATTCATAGCCTTAGTCTTTATGGACAAATTTACCAACCGATGTTGGTCTTTATCAAATTAGT CATATCTCGGGGGGGCAAAACATTAACAGAGAAAACCTCAGAAAATGTTTGTCGCGCCATCCGTGAATCACTAGCAGGCC ACTTTCAGGTGGAAGAAATGTTGGCAGTAGAATTTAATCTAGATAGTGGTTTAGAAGAAGTAGCAACAGAATTTTATGTT GATCCTGTATTTCATCTACCAGCACTGTTAATTGAAGCTGATAATCAACCTGGTCTATTCTACAAAGTTATGTATGCCAT CTGGCAAGAAGATTTGTTAGTGGTTAATGCCAACTTGTTAGTTTGGCGTGGGCGTACTCGCCTCATTCTTTATCTTCTGG GGCCAAATGAAAGTTTGATTCCAGAATACCTCGGCCAAAAAATTGCTGAAGGTGTGCGACAGAGATTGATGGGAGAGAGG TACTAA
Upstream 100 bases:
>100_bases GGTAAACAAATTTTTCCAGAAACCCATGCAGGTGTGGTTAAGTTAGTAGAAGTTGAATGACATTATTAGATAGTATATAT CCCGTTCCCTCTCTTCGATT
Downstream 100 bases:
>100_bases GCTCATACCTATCTAAAATACGTCTTAGTGAGCTCTGAGCTTCAAGCAATAAGCCTGAGTTTAATATCAAATAAATCTCT AAAACCCACAACTATTAATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MAPGLKSSTLELLKRFNRAFPQFYEQFVSSDIQLQNLKLAYQLYRSKQAVIELKPESSKSALYFTYRNQSFLLSDIFGVL AAYGLTIHSLSLYGQIYQPMLVFIKLVISRGGKTLTEKTSENVCRAIRESLAGHFQVEEMLAVEFNLDSGLEEVATEFYV DPVFHLPALLIEADNQPGLFYKVMYAIWQEDLLVVNANLLVWRGRTRLILYLLGPNESLIPEYLGQKIAEGVRQRLMGER Y
Sequences:
>Translated_241_residues MAPGLKSSTLELLKRFNRAFPQFYEQFVSSDIQLQNLKLAYQLYRSKQAVIELKPESSKSALYFTYRNQSFLLSDIFGVL AAYGLTIHSLSLYGQIYQPMLVFIKLVISRGGKTLTEKTSENVCRAIRESLAGHFQVEEMLAVEFNLDSGLEEVATEFYV DPVFHLPALLIEADNQPGLFYKVMYAIWQEDLLVVNANLLVWRGRTRLILYLLGPNESLIPEYLGQKIAEGVRQRLMGER Y >Mature_240_residues APGLKSSTLELLKRFNRAFPQFYEQFVSSDIQLQNLKLAYQLYRSKQAVIELKPESSKSALYFTYRNQSFLLSDIFGVLA AYGLTIHSLSLYGQIYQPMLVFIKLVISRGGKTLTEKTSENVCRAIRESLAGHFQVEEMLAVEFNLDSGLEEVATEFYVD PVFHLPALLIEADNQPGLFYKVMYAIWQEDLLVVNANLLVWRGRTRLILYLLGPNESLIPEYLGQKIAEGVRQRLMGERY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27620; Mature: 27489
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPGLKSSTLELLKRFNRAFPQFYEQFVSSDIQLQNLKLAYQLYRSKQAVIELKPESSKS CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC ALYFTYRNQSFLLSDIFGVLAAYGLTIHSLSLYGQIYQPMLVFIKLVISRGGKTLTEKTS EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ENVCRAIRESLAGHFQVEEMLAVEFNLDSGLEEVATEFYVDPVFHLPALLIEADNQPGLF HHHHHHHHHHHHCCHHHHHHHHEEECCCCCHHHHHHHHHCCHHHHHHHHEEECCCCCCHH YKVMYAIWQEDLLVVNANLLVWRGRTRLILYLLGPNESLIPEYLGQKIAEGVRQRLMGER HHHHHHHHHCCEEEEECCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC Y C >Mature Secondary Structure APGLKSSTLELLKRFNRAFPQFYEQFVSSDIQLQNLKLAYQLYRSKQAVIELKPESSKS CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC ALYFTYRNQSFLLSDIFGVLAAYGLTIHSLSLYGQIYQPMLVFIKLVISRGGKTLTEKTS EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH ENVCRAIRESLAGHFQVEEMLAVEFNLDSGLEEVATEFYVDPVFHLPALLIEADNQPGLF HHHHHHHHHHHHCCHHHHHHHHEEECCCCCHHHHHHHHHCCHHHHHHHHEEECCCCCCHH YKVMYAIWQEDLLVVNANLLVWRGRTRLILYLLGPNESLIPEYLGQKIAEGVRQRLMGER HHHHHHHHHCCEEEEECCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA