| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475298
Identifier: 113475298
GI number: 113475298
Start: 2454785
End: 2455579
Strand: Direct
Name: 113475298
Synonym: Tery_1607
Alternate gene names: NA
Gene position: 2454785-2455579 (Clockwise)
Preceding gene: 113475297
Following gene: 113475300
Centisome position: 31.67
GC content: 33.21
Gene sequence:
>795_bases ATGGTAGCAACAAATGAGATAGATATAGACTTAGAAGAACTAGAAGAAGAAGGAGAAGAATTTCAAGTTCCTTTGCTAAA TATGTCTGTCAAAGACCCGAGATTTATTGGAGGAACTATTGGTATTTTAGGCTTTGGAATAGCAGCTTTCTTAGGATATA GTCAGCTTAAACCAACTATAGAAAAAAATACTGAATTAAGGGCAGAGATAGAAGCAGCAGAAATCAAAATTAAACAGCAG AAAAAACAAATAGAAGAACGACCAAAGGTAGAGGAGGAAAACAAAAAAGCTGAAAGAAAAAGGGAAGATGTAACCAGCTT ATTTGCTAGTGAAAAAACTATGAAAACTCTACTATATGATGTTAATCAACTTATCGATCAAATTAATGGCGGAATTACAG AGGAAGAAAAACAAGCAAAAATGACAAAGTTTCAACCAGTTGAGCCAAAAAATGGTAATTATATAGTTAATGATAACTCA TTAGGACCACTGGTAAATGGCAAGTTAAAGCGACGAGAATTCAAAGTAGAATTTGAAGGTAGTTATCCCCAAACAAGAGC ATTTATGACTGCTATAGAGAGGATGGAAACATTATTAGTAGTGAAAAACTTAATAACTAAACTCAAACAAGGAAATGAGG TTATAGAAGTTGAATGGAGGCAAAATAAATTTGTGCCAGTTAGCAAGCCAGAAAGTCGACTAATATCATCCTTTGATATG CATGCTCTATTGGCTTTAAGTGAAAAAGAGTCATTGGGTGTAAAAGGTTCTACAAAACAAGAAGAAAATAAGTAA
Upstream 100 bases:
>100_bases CTTTAGGTGCATCAGAATTACTGCCTGAGTTAAAAAGTCAAGGAGCAATTGGATTAGTAGATAGAATAGAAATACTAAAA GAAAAAGGAATACTTTAAAA
Downstream 100 bases:
>100_bases CATCATCTGCCAAATAAATGTTATTTTTTCAAAGAAATTAGGTTTAAAATTTCATCTTTATTTGACCTTATTTTTTCCCT AAAGCTAGGGTGAAAGTAGA
Product: type IV pilus assembly protein PilO
Products: NA
Alternate protein names: Type II And III Secretion System Protein; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 264; Mature: 264
Protein sequence:
>264_residues MVATNEIDIDLEELEEEGEEFQVPLLNMSVKDPRFIGGTIGILGFGIAAFLGYSQLKPTIEKNTELRAEIEAAEIKIKQQ KKQIEERPKVEEENKKAERKREDVTSLFASEKTMKTLLYDVNQLIDQINGGITEEEKQAKMTKFQPVEPKNGNYIVNDNS LGPLVNGKLKRREFKVEFEGSYPQTRAFMTAIERMETLLVVKNLITKLKQGNEVIEVEWRQNKFVPVSKPESRLISSFDM HALLALSEKESLGVKGSTKQEENK
Sequences:
>Translated_264_residues MVATNEIDIDLEELEEEGEEFQVPLLNMSVKDPRFIGGTIGILGFGIAAFLGYSQLKPTIEKNTELRAEIEAAEIKIKQQ KKQIEERPKVEEENKKAERKREDVTSLFASEKTMKTLLYDVNQLIDQINGGITEEEKQAKMTKFQPVEPKNGNYIVNDNS LGPLVNGKLKRREFKVEFEGSYPQTRAFMTAIERMETLLVVKNLITKLKQGNEVIEVEWRQNKFVPVSKPESRLISSFDM HALLALSEKESLGVKGSTKQEENK >Mature_264_residues MVATNEIDIDLEELEEEGEEFQVPLLNMSVKDPRFIGGTIGILGFGIAAFLGYSQLKPTIEKNTELRAEIEAAEIKIKQQ KKQIEERPKVEEENKKAERKREDVTSLFASEKTMKTLLYDVNQLIDQINGGITEEEKQAKMTKFQPVEPKNGNYIVNDNS LGPLVNGKLKRREFKVEFEGSYPQTRAFMTAIERMETLLVVKNLITKLKQGNEVIEVEWRQNKFVPVSKPESRLISSFDM HALLALSEKESLGVKGSTKQEENK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30078; Mature: 30078
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVATNEIDIDLEELEEEGEEFQVPLLNMSVKDPRFIGGTIGILGFGIAAFLGYSQLKPTI CCCCCCCCCCHHHHHCCCCEEECEEECCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCH EKNTELRAEIEAAEIKIKQQKKQIEERPKVEEENKKAERKREDVTSLFASEKTMKTLLYD HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNQLIDQINGGITEEEKQAKMTKFQPVEPKNGNYIVNDNSLGPLVNGKLKRREFKVEFEG HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEECEEEEEEECC SYPQTRAFMTAIERMETLLVVKNLITKLKQGNEVIEVEWRQNKFVPVSKPESRLISSFDM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH HALLALSEKESLGVKGSTKQEENK HHHHEECCHHHCCCCCCCCCCCCC >Mature Secondary Structure MVATNEIDIDLEELEEEGEEFQVPLLNMSVKDPRFIGGTIGILGFGIAAFLGYSQLKPTI CCCCCCCCCCHHHHHCCCCEEECEEECCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCCH EKNTELRAEIEAAEIKIKQQKKQIEERPKVEEENKKAERKREDVTSLFASEKTMKTLLYD HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNQLIDQINGGITEEEKQAKMTKFQPVEPKNGNYIVNDNSLGPLVNGKLKRREFKVEFEG HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCEECEEEEEEECC SYPQTRAFMTAIERMETLLVVKNLITKLKQGNEVIEVEWRQNKFVPVSKPESRLISSFDM CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH HALLALSEKESLGVKGSTKQEENK HHHHEECCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA