| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is aroK [H]
Identifier: 113475204
GI number: 113475204
Start: 2290170
End: 2290724
Strand: Reverse
Name: aroK [H]
Synonym: Tery_1506
Alternate gene names: 113475204
Gene position: 2290724-2290170 (Counterclockwise)
Preceding gene: 113475205
Following gene: 113475202
Centisome position: 29.56
GC content: 35.14
Gene sequence:
>555_bases ATGGATATTAGTAATAGGAAATTATTACAGGGAGTAAATCTTTATCTAGTGGGGATGATGGGTGCTGGTAAAACAACTGT GGGACATTTACTAGCCCAACACTTAGGATATAGTTTTCTTGATACAGATAATTTAATTACTCAAGCTGCTGGCAAGTCAA TTAACGAAATTTTTGCCACTGAAGGTGAAGCAGCTTTTCGGGAGTTGGAAACAAACATATTATCAGAAATATCTAGTTAC AAAAATTTGACTATTGCTACAGGTGGTGGTATAGTTATAAGTCGATTTAACTGGAGTTATTTACGGCATGGCATAGTAGT TTGGTTAGATGTGCCAGTAGAAGTTTTATATAGTCGCTTGCAAGGCGATCAGACTAGACCTTTAATTCAAAATAGTAACC CTTTAGCTAGACTTCAGGCTATTTTAGAGGAAAGAAGACCGTTTTATAATTGTGCAGATGTTCATGTTAATGTTGATATT CAAGATACACCTCAACAAGTGACAATTTTAACCTTGGAAGAAATAAAAAAAGTGCTAAAGTCATCTCAGAGGTAG
Upstream 100 bases:
>100_bases GAACTTCAACAGAATAAAATCCTAATTCCATTACTCCTAATCCATTAAAATAAGGATATGTCTTATTTAACTTTACTTTT ATAAACTATAACTCATAACT
Downstream 100 bases:
>100_bases TCGCTTAGTTATTCATTAGCTTTTTTCTAGTAGAAGCTCTATACTAAAAACGAAGAGTTTGAGTTTAGGATGAAAGGGTT ATTGTTATAAGAATTTATTA
Product: shikimate kinase
Products: NA
Alternate protein names: SK [H]
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MDISNRKLLQGVNLYLVGMMGAGKTTVGHLLAQHLGYSFLDTDNLITQAAGKSINEIFATEGEAAFRELETNILSEISSY KNLTIATGGGIVISRFNWSYLRHGIVVWLDVPVEVLYSRLQGDQTRPLIQNSNPLARLQAILEERRPFYNCADVHVNVDI QDTPQQVTILTLEEIKKVLKSSQR
Sequences:
>Translated_184_residues MDISNRKLLQGVNLYLVGMMGAGKTTVGHLLAQHLGYSFLDTDNLITQAAGKSINEIFATEGEAAFRELETNILSEISSY KNLTIATGGGIVISRFNWSYLRHGIVVWLDVPVEVLYSRLQGDQTRPLIQNSNPLARLQAILEERRPFYNCADVHVNVDI QDTPQQVTILTLEEIKKVLKSSQR >Mature_184_residues MDISNRKLLQGVNLYLVGMMGAGKTTVGHLLAQHLGYSFLDTDNLITQAAGKSINEIFATEGEAAFRELETNILSEISSY KNLTIATGGGIVISRFNWSYLRHGIVVWLDVPVEVLYSRLQGDQTRPLIQNSNPLARLQAILEERRPFYNCADVHVNVDI QDTPQQVTILTLEEIKKVLKSSQR
Specific function: Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate [H]
COG id: COG0703
COG function: function code E; Shikimate kinase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate kinase family [H]
Homologues:
Organism=Homo sapiens, GI153792148, Length=177, Percent_Identity=29.9435028248588, Blast_Score=70, Evalue=1e-12, Organism=Escherichia coli, GI87082255, Length=152, Percent_Identity=39.4736842105263, Blast_Score=112, Evalue=1e-26, Organism=Escherichia coli, GI1786587, Length=173, Percent_Identity=36.4161849710983, Blast_Score=99, Evalue=2e-22,
Paralogues:
None
Copy number: 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000623 [H]
Pfam domain/function: PF01202 SKI [H]
EC number: =2.7.1.71 [H]
Molecular weight: Translated: 20571; Mature: 20571
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDISNRKLLQGVNLYLVGMMGAGKTTVGHLLAQHLGYSFLDTDNLITQAAGKSINEIFAT CCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHC EGEAAFRELETNILSEISSYKNLTIATGGGIVISRFNWSYLRHGIVVWLDVPVEVLYSRL CCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCHHHHHCCEEEEECCCHHHHHHHH QGDQTRPLIQNSNPLARLQAILEERRPFYNCADVHVNVDIQDTPQQVTILTLEEIKKVLK CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEHHHHHHHHH SSQR HCCC >Mature Secondary Structure MDISNRKLLQGVNLYLVGMMGAGKTTVGHLLAQHLGYSFLDTDNLITQAAGKSINEIFAT CCCCCHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHC EGEAAFRELETNILSEISSYKNLTIATGGGIVISRFNWSYLRHGIVVWLDVPVEVLYSRL CCHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEECCHHHHHCCEEEEECCCHHHHHHHH QGDQTRPLIQNSNPLARLQAILEERRPFYNCADVHVNVDIQDTPQQVTILTLEEIKKVLK CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEEEHHHHHHHHH SSQR HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA