| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is pleC [H]
Identifier: 113475126
GI number: 113475126
Start: 2146092
End: 2148653
Strand: Reverse
Name: pleC [H]
Synonym: Tery_1418
Alternate gene names: 113475126
Gene position: 2148653-2146092 (Counterclockwise)
Preceding gene: 113475128
Following gene: 113475125
Centisome position: 27.72
GC content: 30.84
Gene sequence:
>2562_bases ATGGCTATTTCATACAAAATAATTGGGGATATGCCCAGTTTCCCACCAGCAAAACCAGACTTAATTTTGCCTTTAAATAT ACTTGAGCCGTTAAGTCAACTATTACAAAAAACCGTTCAAGGTTTAGACAGTATAATCATTACAGAAGATATATTGGCAA CCACTCAATCCCTGATTTTTCCAGGGGTAAAATTCACAGCAGTTATTTCCAAGAAGTTTAATGGGCTTTTGTGGGGCAAA CTCATCAAGGATTTATCAAACCCTAAGAGCCAGAATAGAGAACAGCAAGAAAAAAGTTATAGTTTACAATCTAACTCTTT TAGCTTTCCCTTTAATACGAAAAATTTGGGAAGTTTAAAACTTAATGTAGGGTTAAGTTTTGATCCAGAGGAAATTAAAT TTTTTTTACACCAAATTATTAATAGATTAGAGGCAGACAAAACTAAGTTATTCATAAGATCTAAACTTAAATATAGAATT AATCATCTTCAAGCAAATAATAGTAGTATCCAGAGTGAATTTACCTTGAAATTAATCAAATTATTGACTTCTGATGAAAA AATAGATTCTATTTTCAGGATGACAAGTAATCAAAAACCAAGGGAAAAAAAAAATTATACTGAGCTATCAAAAATTAATT TTCATAGCAAATCTACTACTAATACTGAATTCATAACAGAAACTAATTTGCTACAAAATAAGAAATTATTAGCATCAGAT TCAGTTATGAATGATCAAGAATATCCATTAGTATGTAAACCTATTGAGATAGCTCTAAATCAAAAACTAGAACAAGAAAG ACTTCTTAATCAAGTCACAGCTCAAATTCGTCAAAGTTTAGAACTGCCAGAAATTTTATCAACTGCTGTGAAGGAGGTCA GAAAGTTTATACAAGTAGATAGATTATTGATTTATGAGTTGAATAATCCCTTATTATTAACAGATAATATTACAACAGTA AATGAACAAAAAGGCTCCGTCAAGTATGAGTCTTTGGTATCTAATAAAATTTCTTCTTTATTAGGTTTAAGTGAGAGAAA AAACTGCTTTTTTCTTCCTAATAGTTCTTTATTTGAATATAGTAAAATCTCTGTTCATTTTATAGCTGATATTGAAGTAG CTTATGAGAAGTTTCCTGAGCTACTAGAATTGATGGAACAACATCAAATAAAAGCTAAATTATTAGTACCAATTATAGTT GATCAAAAATTGTGGGGATTATTAATTGCTCATCAATGTTCTGAGCGAGAATGGCAAGATGATGAAAAAAGATTTCTTGA AGAAATTGCAGAACATTTAGCTATCGCTATTTATCAAGCTCAATTATATGGAGAATTACAAAAGCAAAAACAAACTTTAG AAAAACGGGTAGTTGAGCGAATTCAGGATCTTTATGATGCGGTTCAAAGTGCAGAATCAGCTAACCGTGCTAAAAGTGAA TTTTTAGCTACAATGAGCCATGAATTACGCACTCCTCTGACCTGTGTTATTGGTATTTCTTCAACTCTTTTGCAGTGGTC TTATGGCAATAGAGGAGCTAAGAAAATGCCGATACAAAAGCAAAGAGATTATTTAAAAATAATCCATGATAGTGGCGAAC ATCTCCTGGAATTAATCAATGATATTCTAGATTTATCTCAAGTAGAAGCAGGCAAAACAGTATTAAAAATTAGTGAATTT TCTCTGTCTAAAATTAGTTATGAACTTTTGCAAAATTTTAGGGAAAAGGCGGAACAGAATGAAGTTAAACTAATTTTTGA ACCAACAGTAAATCCACAATTAGATCTATTTGCTGCTGACCAAAGACGAGTTAAACAGATTCTTTTTAATCTTCTGAGTA ATGGGATTAAATTTACTCCTAATGGGGGTAGTGTAAGACTTAAAGTTATGAGATATAAAAATACAGCAATTTTTCAAGTA GAAGATACTGGTATGGGAATTTCTCAAGAGCAAAAACCATTATTATTTAAGAAATTTCAACAACTAAATTCTCCTTATAA CCGTCAACAAGGAGGTACTGGTTTAGGTCTAGCTTTAACTAAACAATTAGTTGAACTTCATAATGGAATTATTGAAGTGG AATCTACTGTCAATGTCGGCTCTACTTTTACAGTTAAATTGCCAGCACAACAACTTAAATCAGGAAATGAAAAACGTAAA CAAAAAGGAGAAAGTTTATCAAATGTTTTATCTTTACAAGGCAGTGTAGTATTGATCGAACAAGAAGAAGATATCGCTAC AGTAATTTGTGATATTTTAACAACAGCAGGGTTAAAGGTTGTGTGGATAATAGAAGGTTCTACTGCTGTTGAGCAAGTCA TTTTATTGCAACCTGTTGTTATAATTATAGATATGCAGTTACCGGGAATTAATGGCATAGAAATTATCGATCAGTTACGC ACAACAAGCAGCAGTAAAAATATTAAATTTTTGGCATTAACTACTTTGAATACAGAAATAAATCGGGAATATTGTGATGC TATTGGTGTGGATGAATGTTTAACTAAACCAGTTAATCTTGAATATTTATTGAATAAAATGATACATTTACTGGCTAATT AA
Upstream 100 bases:
>100_bases TACTGTTACAAATTAGATTAAATAATCTAACATTTAATTAGTATTTAATGATTGCATAAATAATAATCTTTGTCCAGCGC TAAAATATTATATAAGTATT
Downstream 100 bases:
>100_bases AATCAATTGCTATTTGTCAGTTATCTAAGCAATTAACAGGTATAAAATCTTGTTAATTTTGCCTTAGAAAAATTCTCAAA AATCACATAGCTTGTGCTAT
Product: GAF sensor hybrid histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 853; Mature: 852
Protein sequence:
>853_residues MAISYKIIGDMPSFPPAKPDLILPLNILEPLSQLLQKTVQGLDSIIITEDILATTQSLIFPGVKFTAVISKKFNGLLWGK LIKDLSNPKSQNREQQEKSYSLQSNSFSFPFNTKNLGSLKLNVGLSFDPEEIKFFLHQIINRLEADKTKLFIRSKLKYRI NHLQANNSSIQSEFTLKLIKLLTSDEKIDSIFRMTSNQKPREKKNYTELSKINFHSKSTTNTEFITETNLLQNKKLLASD SVMNDQEYPLVCKPIEIALNQKLEQERLLNQVTAQIRQSLELPEILSTAVKEVRKFIQVDRLLIYELNNPLLLTDNITTV NEQKGSVKYESLVSNKISSLLGLSERKNCFFLPNSSLFEYSKISVHFIADIEVAYEKFPELLELMEQHQIKAKLLVPIIV DQKLWGLLIAHQCSEREWQDDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSE FLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEF SLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQV EDTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQLKSGNEKRK QKGESLSNVLSLQGSVVLIEQEEDIATVICDILTTAGLKVVWIIEGSTAVEQVILLQPVVIIIDMQLPGINGIEIIDQLR TTSSSKNIKFLALTTLNTEINREYCDAIGVDECLTKPVNLEYLLNKMIHLLAN
Sequences:
>Translated_853_residues MAISYKIIGDMPSFPPAKPDLILPLNILEPLSQLLQKTVQGLDSIIITEDILATTQSLIFPGVKFTAVISKKFNGLLWGK LIKDLSNPKSQNREQQEKSYSLQSNSFSFPFNTKNLGSLKLNVGLSFDPEEIKFFLHQIINRLEADKTKLFIRSKLKYRI NHLQANNSSIQSEFTLKLIKLLTSDEKIDSIFRMTSNQKPREKKNYTELSKINFHSKSTTNTEFITETNLLQNKKLLASD SVMNDQEYPLVCKPIEIALNQKLEQERLLNQVTAQIRQSLELPEILSTAVKEVRKFIQVDRLLIYELNNPLLLTDNITTV NEQKGSVKYESLVSNKISSLLGLSERKNCFFLPNSSLFEYSKISVHFIADIEVAYEKFPELLELMEQHQIKAKLLVPIIV DQKLWGLLIAHQCSEREWQDDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSE FLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEF SLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQV EDTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQLKSGNEKRK QKGESLSNVLSLQGSVVLIEQEEDIATVICDILTTAGLKVVWIIEGSTAVEQVILLQPVVIIIDMQLPGINGIEIIDQLR TTSSSKNIKFLALTTLNTEINREYCDAIGVDECLTKPVNLEYLLNKMIHLLAN >Mature_852_residues AISYKIIGDMPSFPPAKPDLILPLNILEPLSQLLQKTVQGLDSIIITEDILATTQSLIFPGVKFTAVISKKFNGLLWGKL IKDLSNPKSQNREQQEKSYSLQSNSFSFPFNTKNLGSLKLNVGLSFDPEEIKFFLHQIINRLEADKTKLFIRSKLKYRIN HLQANNSSIQSEFTLKLIKLLTSDEKIDSIFRMTSNQKPREKKNYTELSKINFHSKSTTNTEFITETNLLQNKKLLASDS VMNDQEYPLVCKPIEIALNQKLEQERLLNQVTAQIRQSLELPEILSTAVKEVRKFIQVDRLLIYELNNPLLLTDNITTVN EQKGSVKYESLVSNKISSLLGLSERKNCFFLPNSSLFEYSKISVHFIADIEVAYEKFPELLELMEQHQIKAKLLVPIIVD QKLWGLLIAHQCSEREWQDDEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSEF LATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELINDILDLSQVEAGKTVLKISEFS LSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAADQRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVE DTGMGISQEQKPLLFKKFQQLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQLKSGNEKRKQ KGESLSNVLSLQGSVVLIEQEEDIATVICDILTTAGLKVVWIIEGSTAVEQVILLQPVVIIIDMQLPGINGIEIIDQLRT TSSSKNIKFLALTTLNTEINREYCDAIGVDECLTKPVNLEYLLNKMIHLLAN
Specific function: Member of the two-component regulatory system involved in the regulation of polar organelle development. PleC functions as a membrane-associated protein kinase that transfers phosphate to the response regulator pleD, leading to its activation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI87081816, Length=370, Percent_Identity=30.8108108108108, Blast_Score=154, Evalue=2e-38, Organism=Escherichia coli, GI1789149, Length=434, Percent_Identity=31.1059907834101, Blast_Score=150, Evalue=3e-37, Organism=Escherichia coli, GI1788713, Length=398, Percent_Identity=29.6482412060301, Blast_Score=148, Evalue=2e-36, Organism=Escherichia coli, GI48994928, Length=376, Percent_Identity=30.8510638297872, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI145693157, Length=269, Percent_Identity=35.3159851301115, Blast_Score=133, Evalue=4e-32, Organism=Escherichia coli, GI1786600, Length=236, Percent_Identity=28.8135593220339, Blast_Score=100, Evalue=6e-22, Organism=Escherichia coli, GI1788393, Length=260, Percent_Identity=27.3076923076923, Blast_Score=95, Evalue=2e-20, Organism=Escherichia coli, GI1786783, Length=257, Percent_Identity=26.4591439688716, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI1788549, Length=231, Percent_Identity=27.7056277056277, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1790436, Length=233, Percent_Identity=27.4678111587983, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI1786912, Length=237, Percent_Identity=27.4261603375527, Blast_Score=80, Evalue=5e-16, Organism=Escherichia coli, GI1790300, Length=245, Percent_Identity=26.530612244898, Blast_Score=79, Evalue=9e-16, Organism=Escherichia coli, GI1790346, Length=234, Percent_Identity=26.4957264957265, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1788279, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=8e-12, Organism=Escherichia coli, GI1787894, Length=111, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322044, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 96837; Mature: 96706
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS50046 PHYTOCHROME_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISYKIIGDMPSFPPAKPDLILPLNILEPLSQLLQKTVQGLDSIIITEDILATTQSLIF CEEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PGVKFTAVISKKFNGLLWGKLIKDLSNPKSQNREQQEKSYSLQSNSFSFPFNTKNLGSLK CCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEE LNVGLSFDPEEIKFFLHQIINRLEADKTKLFIRSKLKYRINHLQANNSSIQSEFTLKLIK EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LLTSDEKIDSIFRMTSNQKPREKKNYTELSKINFHSKSTTNTEFITETNLLQNKKLLASD HHHCCHHHHHHHHHCCCCCCCHHHCCHHHHHEECCCCCCCCCEEEEHHHHHHCCCHHHCC SVMNDQEYPLVCKPIEIALNQKLEQERLLNQVTAQIRQSLELPEILSTAVKEVRKFIQVD CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RLLIYELNNPLLLTDNITTVNEQKGSVKYESLVSNKISSLLGLSERKNCFFLPNSSLFEY HEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEE SKISVHFIADIEVAYEKFPELLELMEQHQIKAKLLVPIIVDQKLWGLLIAHQCSEREWQD CCEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHHHHHHCCCCCCC DEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELIN HHHHHHHHHCCCEEEEEECHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH DILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAAD HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC QRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVEDTGMGISQEQKPLLFKKFQ HHHHHHHHHHHHHCCEEECCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHH QLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQLKSGNEKRK HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECEECCCCEEEEEECHHHHHCCCHHHH QKGESLSNVLSLQGSVVLIEQEEDIATVICDILTTAGLKVVWIIEGSTAVEQVILLQPVV HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCEE IIIDMQLPGINGIEIIDQLRTTSSSKNIKFLALTTLNTEINREYCDAIGVDECLTKPVNL EEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCHHCHHHHHHCCHHHHHCCCCCH EYLLNKMIHLLAN HHHHHHHHHHHCC >Mature Secondary Structure AISYKIIGDMPSFPPAKPDLILPLNILEPLSQLLQKTVQGLDSIIITEDILATTQSLIF EEEEEEECCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PGVKFTAVISKKFNGLLWGKLIKDLSNPKSQNREQQEKSYSLQSNSFSFPFNTKNLGSLK CCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEE LNVGLSFDPEEIKFFLHQIINRLEADKTKLFIRSKLKYRINHLQANNSSIQSEFTLKLIK EEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH LLTSDEKIDSIFRMTSNQKPREKKNYTELSKINFHSKSTTNTEFITETNLLQNKKLLASD HHHCCHHHHHHHHHCCCCCCCHHHCCHHHHHEECCCCCCCCCEEEEHHHHHHCCCHHHCC SVMNDQEYPLVCKPIEIALNQKLEQERLLNQVTAQIRQSLELPEILSTAVKEVRKFIQVD CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH RLLIYELNNPLLLTDNITTVNEQKGSVKYESLVSNKISSLLGLSERKNCFFLPNSSLFEY HEEEEECCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEE SKISVHFIADIEVAYEKFPELLELMEQHQIKAKLLVPIIVDQKLWGLLIAHQCSEREWQD CCEEEEEEEHHHHHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHHHHHHCCCCCCC DEKRFLEEIAEHLAIAIYQAQLYGELQKQKQTLEKRVVERIQDLYDAVQSAESANRAKSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLATMSHELRTPLTCVIGISSTLLQWSYGNRGAKKMPIQKQRDYLKIIHDSGEHLLELIN HHHHHHHHHCCCEEEEEECHHHHHEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHH DILDLSQVEAGKTVLKISEFSLSKISYELLQNFREKAEQNEVKLIFEPTVNPQLDLFAAD HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECC QRRVKQILFNLLSNGIKFTPNGGSVRLKVMRYKNTAIFQVEDTGMGISQEQKPLLFKKFQ HHHHHHHHHHHHHCCEEECCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHH QLNSPYNRQQGGTGLGLALTKQLVELHNGIIEVESTVNVGSTFTVKLPAQQLKSGNEKRK HHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECEECCCCEEEEEECHHHHHCCCHHHH QKGESLSNVLSLQGSVVLIEQEEDIATVICDILTTAGLKVVWIIEGSTAVEQVILLQPVV HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCEE IIIDMQLPGINGIEIIDQLRTTSSSKNIKFLALTTLNTEINREYCDAIGVDECLTKPVNL EEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEEEEECCHHCHHHHHHCCHHHHHCCCCCH EYLLNKMIHLLAN HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8421698; 11259647 [H]