Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475110

Identifier: 113475110

GI number: 113475110

Start: 2130195

End: 2130680

Strand: Direct

Name: 113475110

Synonym: Tery_1398

Alternate gene names: NA

Gene position: 2130195-2130680 (Clockwise)

Preceding gene: 113475108

Following gene: 113475111

Centisome position: 27.49

GC content: 38.48

Gene sequence:

>486_bases
ATGTTCGTTGGTACAAAAGAAGCTGCTTCTCTTTTGAATATTTCAACTCAAAGAGTACGAGTCTTAATTAAAGAAGGCCG
GGTTCAAGGAGCCAGAAAAATAAATGGTCATACCTGGGTAATTCCTTTATATAGAGGAATGCCAAGAGTTTCTCGTAAAA
AGCGTGGACCATTAGCCCGCTGGTATTCCTGTAGTCATTGTGGCAAAAATACAATTCATTTCCATCGTCCTAATATTGCT
GCAAATAAAAAGAAGAAAAATACCAATCTTCATGTACTTTCTGCTAAACGAGGAACTAAAACGTTAGCAAAAGGTCACGA
AATTGAGATTCATGGTCCTTGTAAAATTGTTTATCGCCCCAATAAACCTCATTCTTGTGGAGCAACGGTCTGGATTGAGA
CTTTGGCAACAGCAACAATGTTGAATTTTGATGGTACATTGGAGCAAGTTGACAGCAGATGGATTGGAGAAGAGTCGTCA
ATGTAA

Upstream 100 bases:

>100_bases
CTATCTGTCAATGCGTAACTCCTATGGAATTTACATTATTTTACTATTGACAGAAAATGCCATAAATCTTACTATTGTGA
AGTACGCAATAGTAAAAATT

Downstream 100 bases:

>100_bases
GAAATTAGACGTTGGTGAATTAAGGTACTGGAAAGTACAAAAGTTATTCTAAAAAACGATGGGCTAAACTGAGCTGAAAG
TATTACTGAACAAGGTTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MFVGTKEAASLLNISTQRVRVLIKEGRVQGARKINGHTWVIPLYRGMPRVSRKKRGPLARWYSCSHCGKNTIHFHRPNIA
ANKKKKNTNLHVLSAKRGTKTLAKGHEIEIHGPCKIVYRPNKPHSCGATVWIETLATATMLNFDGTLEQVDSRWIGEESS
M

Sequences:

>Translated_161_residues
MFVGTKEAASLLNISTQRVRVLIKEGRVQGARKINGHTWVIPLYRGMPRVSRKKRGPLARWYSCSHCGKNTIHFHRPNIA
ANKKKKNTNLHVLSAKRGTKTLAKGHEIEIHGPCKIVYRPNKPHSCGATVWIETLATATMLNFDGTLEQVDSRWIGEESS
M
>Mature_161_residues
MFVGTKEAASLLNISTQRVRVLIKEGRVQGARKINGHTWVIPLYRGMPRVSRKKRGPLARWYSCSHCGKNTIHFHRPNIA
ANKKKKNTNLHVLSAKRGTKTLAKGHEIEIHGPCKIVYRPNKPHSCGATVWIETLATATMLNFDGTLEQVDSRWIGEESS
M

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18124; Mature: 18124

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVGTKEAASLLNISTQRVRVLIKEGRVQGARKINGHTWVIPLYRGMPRVSRKKRGPLAR
CCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCHHHHHCCCCHH
WYSCSHCGKNTIHFHRPNIAANKKKKNTNLHVLSAKRGTKTLAKGHEIEIHGPCKIVYRP
HEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEEECCEEEEECC
NKPHSCGATVWIETLATATMLNFDGTLEQVDSRWIGEESSM
CCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFVGTKEAASLLNISTQRVRVLIKEGRVQGARKINGHTWVIPLYRGMPRVSRKKRGPLAR
CCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCEEECCCEEEEECCCCCCCHHHHHCCCCHH
WYSCSHCGKNTIHFHRPNIAANKKKKNTNLHVLSAKRGTKTLAKGHEIEIHGPCKIVYRP
HEECCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEEECCEEEEECC
NKPHSCGATVWIETLATATMLNFDGTLEQVDSRWIGEESSM
CCCCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA