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The map label for this gene is dppB [H]

Identifier: 113475101

GI number: 113475101

Start: 2116190

End: 2117215

Strand: Direct

Name: dppB [H]

Synonym: Tery_1382

Alternate gene names: 113475101

Gene position: 2116190-2117215 (Clockwise)

Preceding gene: 113475100

Following gene: 113475103

Centisome position: 27.31

GC content: 33.82

Gene sequence:

>1026_bases
ATGTCTCGTTCTAAAGCTCTTTATTCTTATATATTAATCCGTTTGCTATTGGCACCACTGATGTTGTGGACAATTAGTAC
TTTAGTTTTCTTATTATTACGAGCAACTCCTGGAGACCCTGTAGATGCTATTCTTGGGCCAAAAGCTTCAACGGCAACTA
AAGAAGCTCTCCGGTCCCAACTTGGTTTAGATGGTTCACTACTAAAACAGTATCTTAACTATCTAGGAAAATTATTTAGT
TTTGACTTAGGTACATCAATGACTACTCGTGGTGAGTCAGTTTGGCAAATTATTCAAAATTATTTTCCAGCTACTTTAGA
ATTAGCAGTATTTAGTATGGCGATCGCTCTAATTGTTGGGATTACTATTGGGTCTATTGCTGCTTCTCATCCCAATACTC
GTTTAGATCTTGGTGGGCGTTTATTTGGAATTATTACTTATGCAGTTCCACCTTTTTGGGCAGGTATGATTTTACAATTA
ATTTTTGCAGTACAGTTAAAATGGTTTCCTCTAGGTACTCGTTTTCCTACTAGTGAAAATCCACCTCCAAGCATTACAGG
TTTATACACAATTGATAGTATTTTAAGTGGTAATATCGAGCATTTTTTTACATCTATATATTATTTAGCTTTACCGAGTT
TAACTTTAGGAATTTTGCTAAGTGGTATTTTTGAAAGAATCGTAAGAATTAATCTCAAACAAACATTAAAAGCTGATTAT
GTCGAAGCTGCTAGAGCAAGAGGTATTTCTGAATTAAGAATATTATTTGCTCATGCTTTGAAAAATGCCATGATTCCAAT
AATTACGGTTTTAGGATTAACATTTGCTGCTTTATTAGGAGGAGCAATATTAACAGAAGTAACTTTTTCTTGGCCTGGTT
TGGCAAATAGATTATATCAGGCAATTAGTTCGCGAGATTATCCAACTGTGCAAGGAATAGTCGTATTTTTTGCTGGTATT
GTTGTTGTAGCTAGTATTTTTATTGATATTTTAAATGCTTACATAGATCCGAGAATTAGGTATTAA

Upstream 100 bases:

>100_bases
CTTGGCACGACCATCTTCGGTGAAACAACCATAACTCACTTTTAACGAAATCCTCTAAAACTAAGCGGTCGATACTGACA
ACCAATAACTGATAACTCAA

Downstream 100 bases:

>100_bases
AATTATGTTGAAAATTATGGCGCAAGTATTTTTTAGAAAAAATACTTGCACTATCAACCTAATCAAGACTCAATAATTGG
ATTTGGGGGAATATCTAAAG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSRSKALYSYILIRLLLAPLMLWTISTLVFLLLRATPGDPVDAILGPKASTATKEALRSQLGLDGSLLKQYLNYLGKLFS
FDLGTSMTTRGESVWQIIQNYFPATLELAVFSMAIALIVGITIGSIAASHPNTRLDLGGRLFGIITYAVPPFWAGMILQL
IFAVQLKWFPLGTRFPTSENPPPSITGLYTIDSILSGNIEHFFTSIYYLALPSLTLGILLSGIFERIVRINLKQTLKADY
VEAARARGISELRILFAHALKNAMIPIITVLGLTFAALLGGAILTEVTFSWPGLANRLYQAISSRDYPTVQGIVVFFAGI
VVVASIFIDILNAYIDPRIRY

Sequences:

>Translated_341_residues
MSRSKALYSYILIRLLLAPLMLWTISTLVFLLLRATPGDPVDAILGPKASTATKEALRSQLGLDGSLLKQYLNYLGKLFS
FDLGTSMTTRGESVWQIIQNYFPATLELAVFSMAIALIVGITIGSIAASHPNTRLDLGGRLFGIITYAVPPFWAGMILQL
IFAVQLKWFPLGTRFPTSENPPPSITGLYTIDSILSGNIEHFFTSIYYLALPSLTLGILLSGIFERIVRINLKQTLKADY
VEAARARGISELRILFAHALKNAMIPIITVLGLTFAALLGGAILTEVTFSWPGLANRLYQAISSRDYPTVQGIVVFFAGI
VVVASIFIDILNAYIDPRIRY
>Mature_340_residues
SRSKALYSYILIRLLLAPLMLWTISTLVFLLLRATPGDPVDAILGPKASTATKEALRSQLGLDGSLLKQYLNYLGKLFSF
DLGTSMTTRGESVWQIIQNYFPATLELAVFSMAIALIVGITIGSIAASHPNTRLDLGGRLFGIITYAVPPFWAGMILQLI
FAVQLKWFPLGTRFPTSENPPPSITGLYTIDSILSGNIEHFFTSIYYLALPSLTLGILLSGIFERIVRINLKQTLKADYV
EAARARGISELRILFAHALKNAMIPIITVLGLTFAALLGGAILTEVTFSWPGLANRLYQAISSRDYPTVQGIVVFFAGIV
VVASIFIDILNAYIDPRIRY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=36.0703812316716, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1787761, Length=315, Percent_Identity=39.3650793650794, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787053, Length=335, Percent_Identity=34.3283582089552, Blast_Score=194, Evalue=5e-51,
Organism=Escherichia coli, GI1789888, Length=337, Percent_Identity=30.2670623145401, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=32.9710144927536, Blast_Score=151, Evalue=7e-38,
Organism=Escherichia coli, GI1787497, Length=340, Percent_Identity=27.0588235294118, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788504, Length=378, Percent_Identity=27.2486772486773, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37453; Mature: 37322

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSKALYSYILIRLLLAPLMLWTISTLVFLLLRATPGDPVDAILGPKASTATKEALRSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHH
LGLDGSLLKQYLNYLGKLFSFDLGTSMTTRGESVWQIIQNYFPATLELAVFSMAIALIVG
HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ITIGSIAASHPNTRLDLGGRLFGIITYAVPPFWAGMILQLIFAVQLKWFPLGTRFPTSEN
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
PPPSITGLYTIDSILSGNIEHFFTSIYYLALPSLTLGILLSGIFERIVRINLKQTLKADY
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEAARARGISELRILFAHALKNAMIPIITVLGLTFAALLGGAILTEVTFSWPGLANRLYQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AISSRDYPTVQGIVVFFAGIVVVASIFIDILNAYIDPRIRY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRSKALYSYILIRLLLAPLMLWTISTLVFLLLRATPGDPVDAILGPKASTATKEALRSQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHH
LGLDGSLLKQYLNYLGKLFSFDLGTSMTTRGESVWQIIQNYFPATLELAVFSMAIALIVG
HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
ITIGSIAASHPNTRLDLGGRLFGIITYAVPPFWAGMILQLIFAVQLKWFPLGTRFPTSEN
HHHHHHHCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
PPPSITGLYTIDSILSGNIEHFFTSIYYLALPSLTLGILLSGIFERIVRINLKQTLKADY
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VEAARARGISELRILFAHALKNAMIPIITVLGLTFAALLGGAILTEVTFSWPGLANRLYQ
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
AISSRDYPTVQGIVVFFAGIVVVASIFIDILNAYIDPRIRY
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]