Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475098

Identifier: 113475098

GI number: 113475098

Start: 2113051

End: 2113173

Strand: Direct

Name: 113475098

Synonym: Tery_1379

Alternate gene names: NA

Gene position: 2113051-2113173 (Clockwise)

Preceding gene: 113475097

Following gene: 113475099

Centisome position: 27.26

GC content: 31.71

Gene sequence:

>123_bases
ATGGTTAAAAACCGTAAATTATCCAGAGCTATTTCAGATTTTGGTTGGAGACAATTTAGAATACTTTTAGAGGAAAAGGC
AGAAAAATGCGGTAAAGAATTTAGAGTCATTGATAGATGGTAA

Upstream 100 bases:

>100_bases
CAAGTTAAAATATACTAGAACTGATTTTCTGCATAAGTTATCTACTCAAACAAAATACGAAAACCAAGTAATAGTTTTAG
AATACTTAAATGTTTCAGGA

Downstream 100 bases:

>100_bases
CCGACCTCTCAAGTATGCTCATGTTGTGGTTTTTGTGGAAGCAAATTAGACCTTTCAGGGGCGAAAATGGGAATGCCTTA
GTTGCCGTACAAAACACGAC

Product: IS605 family transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 40; Mature: 40

Protein sequence:

>40_residues
MVKNRKLSRAISDFGWRQFRILLEEKAEKCGKEFRVIDRW

Sequences:

>Translated_40_residues
MVKNRKLSRAISDFGWRQFRILLEEKAEKCGKEFRVIDRW
>Mature_40_residues
MVKNRKLSRAISDFGWRQFRILLEEKAEKCGKEFRVIDRW

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 4941; Mature: 4941

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKNRKLSRAISDFGWRQFRILLEEKAEKCGKEFRVIDRW
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVKNRKLSRAISDFGWRQFRILLEEKAEKCGKEFRVIDRW
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA