| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475078
Identifier: 113475078
GI number: 113475078
Start: 2068829
End: 2069584
Strand: Reverse
Name: 113475078
Synonym: Tery_1353
Alternate gene names: NA
Gene position: 2069584-2068829 (Counterclockwise)
Preceding gene: 113475080
Following gene: 113475077
Centisome position: 26.7
GC content: 37.83
Gene sequence:
>756_bases ATGACAGGATTATTTCAAATAGGTGATAAATTATTGCAAGCCCAAGATATCCCATCGCTATTACAACGTTATCAGTTAAT GCCTCATTTTTTACGAGGGGTAATAATTGACGAAGCGATCGCTAGCTTGACTTGCACAGAAAAGGAAAAAACAACAGCCT TAGAAAAATTTGAGACTCAATACCAATTAAATAACCCCGAAGCTAAACAAGCATGGCTAAAAAGCCAAAACATGACCCAA GAACAACTAGAAGAAATGGCAATTAGGCCAGTATTGCTAGAAAAATTTAAACAACAAACTTGGAAAAATCAAGTAGAAAG ATATTTTCTCACCCGCAAGAGTAGCTTAGACCAAGTAGTATATTCTCTAATTCGAACAAAAAATCCTGGTTTAGCCCATG AACTATACTTTCGGATAGTAGAAGAAGAGCAAACTTTTGCCGAAGTTGCTCGTGAATATTCAGAAGGCCCAGAAGGGCGA ACAGGAGGGTTGTTAGGCCCTGTCCCCCTAATTCAACCACATCCTTCTATAAGCAAAATTTTATCAGTAAGTCAACCAGG GCAAATCTGGGCTCCACGTCCATTAACAGAATGGACAGTAATTATTAGGTTAGAAAAATTTATCCCAGCACAGCTTGATG ATTCAATGCGTCGGCGTCTAATGGACGAATTATTAGAAAATTGGATACGAGAACAAATAGGAAAAATTGGGCTTTTGAAG CCATTAGGTTCAGATGTATCAGATGTAAAAGTTTAG
Upstream 100 bases:
>100_bases TAAAGCAATAAAAAAAAATGAATCAGTAAACTATTTGGCACTACCTTTTACAGAGAACTAGATTAAAAAGAATAGTGCAA GTTAGTTGGAGAGATAAAAA
Downstream 100 bases:
>100_bases GGTTGAGATCCTCTTCGGGTATTAGATGGTGAAATTTATCCTGAGCTATAGATATTCGGTGGGTTGACGTTTTGCTGACC CAAAGCTTACCCTGAATTCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MTGLFQIGDKLLQAQDIPSLLQRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQYQLNNPEAKQAWLKSQNMTQ EQLEEMAIRPVLLEKFKQQTWKNQVERYFLTRKSSLDQVVYSLIRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGR TGGLLGPVPLIQPHPSISKILSVSQPGQIWAPRPLTEWTVIIRLEKFIPAQLDDSMRRRLMDELLENWIREQIGKIGLLK PLGSDVSDVKV
Sequences:
>Translated_251_residues MTGLFQIGDKLLQAQDIPSLLQRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQYQLNNPEAKQAWLKSQNMTQ EQLEEMAIRPVLLEKFKQQTWKNQVERYFLTRKSSLDQVVYSLIRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGR TGGLLGPVPLIQPHPSISKILSVSQPGQIWAPRPLTEWTVIIRLEKFIPAQLDDSMRRRLMDELLENWIREQIGKIGLLK PLGSDVSDVKV >Mature_250_residues TGLFQIGDKLLQAQDIPSLLQRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQYQLNNPEAKQAWLKSQNMTQE QLEEMAIRPVLLEKFKQQTWKNQVERYFLTRKSSLDQVVYSLIRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGRT GGLLGPVPLIQPHPSISKILSVSQPGQIWAPRPLTEWTVIIRLEKFIPAQLDDSMRRRLMDELLENWIREQIGKIGLLKP LGSDVSDVKV
Specific function: Unknown
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28944; Mature: 28813
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGLFQIGDKLLQAQDIPSLLQRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQ CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH YQLNNPEAKQAWLKSQNMTQEQLEEMAIRPVLLEKFKQQTWKNQVERYFLTRKSSLDQVV HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSLIRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGRTGGLLGPVPLIQPHPSISKI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH LSVSQPGQIWAPRPLTEWTVIIRLEKFIPAQLDDSMRRRLMDELLENWIREQIGKIGLLK HCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCH PLGSDVSDVKV HCCCCHHHCCC >Mature Secondary Structure TGLFQIGDKLLQAQDIPSLLQRYQLMPHFLRGVIIDEAIASLTCTEKEKTTALEKFETQ CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH YQLNNPEAKQAWLKSQNMTQEQLEEMAIRPVLLEKFKQQTWKNQVERYFLTRKSSLDQVV HHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YSLIRTKNPGLAHELYFRIVEEEQTFAEVAREYSEGPEGRTGGLLGPVPLIQPHPSISKI HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHH LSVSQPGQIWAPRPLTEWTVIIRLEKFIPAQLDDSMRRRLMDELLENWIREQIGKIGLLK HCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCH PLGSDVSDVKV HCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA