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The map label for this gene is speA [H]

Identifier: 113475023

GI number: 113475023

Start: 1958159

End: 1959787

Strand: Direct

Name: speA [H]

Synonym: Tery_1276

Alternate gene names: 113475023

Gene position: 1958159-1959787 (Clockwise)

Preceding gene: 113475022

Following gene: 113475027

Centisome position: 25.27

GC content: 35.24

Gene sequence:

>1629_bases
ATGTTTGACCAAACTAAGACACCAATAGTTGAAACTCTTCAAAATCTCACCCAAAAATTTCATGCCCCTTTCTATGCACC
AGGGCATAAACATGGAAAAAGCATTCCACAATCCCTGAGTGAATTATTAGGAAAAAAAGTCTTTCCAGCAGATTTACCAG
AATTACCAGAACTAGATAACTTATTCGCTCCAGACGGTGTAATTCAAGAAGCTCAAGAATTAGCAGCAGAAACCTTCGGC
GCATTACACACCAGATTTATAGTCAACGGTTCTACTTCAGGAATTATTGCCGGAATTCTAGCTACTTGTGGAAATGGAGA
TAAAATAATTTTACCTCGGAATATTCATCAATCTGTAATCTCTGGCTTAATTCTATCTGGAGCAATTCCGATTTTTATCG
ATCCAGAATATGATTTAAATTGGGATATTCCTCTCAGCATTACTCCCGAATCTATTACCCAAACATTAGCAAAACACCCT
GATACTAAAGCAGTTATGATAGTTTATCCTACTTATCATGGTGTTTGTGGAAATATTAGAGCGATCGCCCAACAAGTCCA
CAAATATAATATTCCTCTATTAGTAGATGAAGCTCACGGAGCTCACTTTGCTTTTCATTCAGAATTGCCAATACCAGCAT
TATTAAGTGGAGCAGATTTAAGTGTACAGTCAACTCATAAAACTCTAGGAGCTATGACTCAAGCATCAATGCTTCATGTT
GGTAGTAATCGTATTGATCTTGATCGACTTGAGCAAGCATTACAGATATTACAGTCTAGTAGTCCCAGTTATCTACTTCT
AGCTTCTCTTGATGCTGCCAGACAACAAATGGCTTTATTTGGTGAGGAACTAATGAGCCAAACCCTGGAATTAGCTAAAA
ATGCTAGAAACAGAATTAGTCAACTCTCGAATTATTCAGTATTCAATCTAAAAAGAAGGGAAAAGAAGACAGAAGAAAGA
AATTTTACTTGCTTATCAAAAGATTCAGATTTATTAAAGAATAGGGTTAAAGAAGATATTGGGGACTCAGGAGCAATATT
CTCAAATCCTAATACTCAACTTCCAACTCCCAACTACCCTCCCAATTTTCTAATTAAGAATTATTTCAACCCAGGATTTA
TTGCTCTTGATCTTACAAGATTAACTATTAAAGTTTCTCAGATTGGATTCAGTGGTTATCAGGCTGATGAAATTTTACAT
CAGGAATTAGGAGTTACTTGTGAGTTACCCAGTTTTCTAAATCTGACATTTATTATTTCTCCAGGAAATACAAAGGCAGA
TATTAATCAATTAGTAACTGGTTTGATTAGTTTAAGGCATCGGGGTAGGATTAATTTACCTACTAACGATGGAACAAAAT
TTGACCTTAAAGTGAATGATTTTTCAATACCTATTTCTCCTAGAGATGCTTTTTTTGCTCAGAAGAATTGTTTACCCATT
AAAAAATCTGTAGGATATATCAGTGCCGAATTAATTTGTCCCTATCCACCAGGTATTCCAGTATTAATACCTGGTGAAAT
TATTACAGAAAAGCATATTCAGATACTTGAACAAGTCCAGGCTAATGGTGGCATAATAGTAGGATGTAGTGACCCTATTC
TTAAAACTATCAAAGTCTCTAGATTTTAG

Upstream 100 bases:

>100_bases
ACATGAAGACATAGCTTGATGAAAAGCATCCATTGCTTCAGCAAAGGTATTCAAAGGTAGAGTAAATTAATCAAAGCTCC
TAAAGTATAGGAAAGTTGAA

Downstream 100 bases:

>100_bases
TTTTGACCAGCGCTTGTCATCAAATAGAGGGATTGACATTAAAGGAATAGTATGGGTCTAGATAATAGCTATAGCAATAA
CAGAAAAGGACTGCTCTAAA

Product: arginine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MFDQTKTPIVETLQNLTQKFHAPFYAPGHKHGKSIPQSLSELLGKKVFPADLPELPELDNLFAPDGVIQEAQELAAETFG
ALHTRFIVNGSTSGIIAGILATCGNGDKIILPRNIHQSVISGLILSGAIPIFIDPEYDLNWDIPLSITPESITQTLAKHP
DTKAVMIVYPTYHGVCGNIRAIAQQVHKYNIPLLVDEAHGAHFAFHSELPIPALLSGADLSVQSTHKTLGAMTQASMLHV
GSNRIDLDRLEQALQILQSSSPSYLLLASLDAARQQMALFGEELMSQTLELAKNARNRISQLSNYSVFNLKRREKKTEER
NFTCLSKDSDLLKNRVKEDIGDSGAIFSNPNTQLPTPNYPPNFLIKNYFNPGFIALDLTRLTIKVSQIGFSGYQADEILH
QELGVTCELPSFLNLTFIISPGNTKADINQLVTGLISLRHRGRINLPTNDGTKFDLKVNDFSIPISPRDAFFAQKNCLPI
KKSVGYISAELICPYPPGIPVLIPGEIITEKHIQILEQVQANGGIIVGCSDPILKTIKVSRF

Sequences:

>Translated_542_residues
MFDQTKTPIVETLQNLTQKFHAPFYAPGHKHGKSIPQSLSELLGKKVFPADLPELPELDNLFAPDGVIQEAQELAAETFG
ALHTRFIVNGSTSGIIAGILATCGNGDKIILPRNIHQSVISGLILSGAIPIFIDPEYDLNWDIPLSITPESITQTLAKHP
DTKAVMIVYPTYHGVCGNIRAIAQQVHKYNIPLLVDEAHGAHFAFHSELPIPALLSGADLSVQSTHKTLGAMTQASMLHV
GSNRIDLDRLEQALQILQSSSPSYLLLASLDAARQQMALFGEELMSQTLELAKNARNRISQLSNYSVFNLKRREKKTEER
NFTCLSKDSDLLKNRVKEDIGDSGAIFSNPNTQLPTPNYPPNFLIKNYFNPGFIALDLTRLTIKVSQIGFSGYQADEILH
QELGVTCELPSFLNLTFIISPGNTKADINQLVTGLISLRHRGRINLPTNDGTKFDLKVNDFSIPISPRDAFFAQKNCLPI
KKSVGYISAELICPYPPGIPVLIPGEIITEKHIQILEQVQANGGIIVGCSDPILKTIKVSRF
>Mature_542_residues
MFDQTKTPIVETLQNLTQKFHAPFYAPGHKHGKSIPQSLSELLGKKVFPADLPELPELDNLFAPDGVIQEAQELAAETFG
ALHTRFIVNGSTSGIIAGILATCGNGDKIILPRNIHQSVISGLILSGAIPIFIDPEYDLNWDIPLSITPESITQTLAKHP
DTKAVMIVYPTYHGVCGNIRAIAQQVHKYNIPLLVDEAHGAHFAFHSELPIPALLSGADLSVQSTHKTLGAMTQASMLHV
GSNRIDLDRLEQALQILQSSSPSYLLLASLDAARQQMALFGEELMSQTLELAKNARNRISQLSNYSVFNLKRREKKTEER
NFTCLSKDSDLLKNRVKEDIGDSGAIFSNPNTQLPTPNYPPNFLIKNYFNPGFIALDLTRLTIKVSQIGFSGYQADEILH
QELGVTCELPSFLNLTFIISPGNTKADINQLVTGLISLRHRGRINLPTNDGTKFDLKVNDFSIPISPRDAFFAQKNCLPI
KKSVGYISAELICPYPPGIPVLIPGEIITEKHIQILEQVQANGGIIVGCSDPILKTIKVSRF

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

Organism=Escherichia coli, GI221142684, Length=328, Percent_Identity=27.7439024390244, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082193, Length=584, Percent_Identity=23.2876712328767, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1786384, Length=327, Percent_Identity=26.605504587156, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790573, Length=320, Percent_Identity=25.625, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI1786909, Length=333, Percent_Identity=25.2252252252252, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 59564; Mature: 59564

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDQTKTPIVETLQNLTQKFHAPFYAPGHKHGKSIPQSLSELLGKKVFPADLPELPELDN
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LFAPDGVIQEAQELAAETFGALHTRFIVNGSTSGIIAGILATCGNGDKIILPRNIHQSVI
CCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHH
SGLILSGAIPIFIDPEYDLNWDIPLSITPESITQTLAKHPDTKAVMIVYPTYHGVCGNIR
HHHHHHCCEEEEECCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
AIAQQVHKYNIPLLVDEAHGAHFAFHSELPIPALLSGADLSVQSTHKTLGAMTQASMLHV
HHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GSNRIDLDRLEQALQILQSSSPSYLLLASLDAARQQMALFGEELMSQTLELAKNARNRIS
CCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLSNYSVFNLKRREKKTEERNFTCLSKDSDLLKNRVKEDIGDSGAIFSNPNTQLPTPNYP
HHCCCCEEEEHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
PNFLIKNYFNPGFIALDLTRLTIKVSQIGFSGYQADEILHQELGVTCELPSFLNLTFIIS
CCCHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHHCCCEECCCCCCCEEEEEC
PGNTKADINQLVTGLISLRHRGRINLPTNDGTKFDLKVNDFSIPISPRDAFFAQKNCLPI
CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECEEECCCCCHHHHHCCCCCCH
KKSVGYISAELICPYPPGIPVLIPGEIITEKHIQILEQVQANGGIIVGCSDPILKTIKVS
HHHCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC
RF
CC
>Mature Secondary Structure
MFDQTKTPIVETLQNLTQKFHAPFYAPGHKHGKSIPQSLSELLGKKVFPADLPELPELDN
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
LFAPDGVIQEAQELAAETFGALHTRFIVNGSTSGIIAGILATCGNGDKIILPRNIHQSVI
CCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCEEEECCHHHHHHH
SGLILSGAIPIFIDPEYDLNWDIPLSITPESITQTLAKHPDTKAVMIVYPTYHGVCGNIR
HHHHHHCCEEEEECCCCCCCCCCCEEECHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHH
AIAQQVHKYNIPLLVDEAHGAHFAFHSELPIPALLSGADLSVQSTHKTLGAMTQASMLHV
HHHHHHHHCCCCEEEECCCCCEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHCC
GSNRIDLDRLEQALQILQSSSPSYLLLASLDAARQQMALFGEELMSQTLELAKNARNRIS
CCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLSNYSVFNLKRREKKTEERNFTCLSKDSDLLKNRVKEDIGDSGAIFSNPNTQLPTPNYP
HHCCCCEEEEHHHHHHHHHCCCEEECCCHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCC
PNFLIKNYFNPGFIALDLTRLTIKVSQIGFSGYQADEILHQELGVTCELPSFLNLTFIIS
CCCHHHCCCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHHCCCEECCCCCCCEEEEEC
PGNTKADINQLVTGLISLRHRGRINLPTNDGTKFDLKVNDFSIPISPRDAFFAQKNCLPI
CCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEEEECEEECCCCCHHHHHCCCCCCH
KKSVGYISAELICPYPPGIPVLIPGEIITEKHIQILEQVQANGGIIVGCSDPILKTIKVS
HHHCCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHCCC
RF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969500; 9384377; 1697575; 1936936 [H]