| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474992
Identifier: 113474992
GI number: 113474992
Start: 1902054
End: 1902320
Strand: Reverse
Name: 113474992
Synonym: Tery_1229
Alternate gene names: NA
Gene position: 1902320-1902054 (Counterclockwise)
Preceding gene: 113474998
Following gene: 113474991
Centisome position: 24.55
GC content: 38.58
Gene sequence:
>267_bases ATGTTCACTATTGATATCATTGTGAAGTACACTCCTGTACCATTTTCAATTCAACGTAAGTCCGCTGAGGATGCTGAATC TACTTATGAACAAATCGTTGAGTCTATTCGCTCTGGAAATCCTCAAATTTTAGAATTAACTTGTGAGAAAATACCGGAGA AAAAGATTGCTGTAGTAATGAGTGAAGTTTCTGGTGTTCAAATTTCCCAAAAATCTGGTGCTGCTGCGACTGGAAGGCCA CCTGGTTTTGTAACTGTAGCTCAATGA
Upstream 100 bases:
>100_bases GCAACAAAAAAGTCTGGTTATTACCCATATATATGTTCTATTACTGCCGAGAACCAAGGCGACATAAGTAATCTAATATC TTACACTCACTAATTAAAAA
Downstream 100 bases:
>100_bases ACCCAAAGGATAAAACCAATATTGCCACTCGTTCAGCAATTTTAGTAGAGAATATTTGTTTTAATTGGCCTAATGGCTCT CAAGTATTACGCTCTTGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 88
Protein sequence:
>88_residues MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP PGFVTVAQ
Sequences:
>Translated_88_residues MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP PGFVTVAQ >Mature_88_residues MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP PGFVTVAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0367 family
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1229_TRIEI (Q116J4)
Other databases:
- EMBL: CP000393 - RefSeq: YP_721053.1 - STRING: Q116J4 - GeneID: 4242156 - GenomeReviews: CP000393_GR - KEGG: ter:Tery_1229 - NMPDR: fig|203124.1.peg.1365 - eggNOG: NOG15377 - HOGENOM: HBG284625 - OMA: VQIYEKS - ProtClustDB: PRK13683 - BioCyc: TERY203124:TERY_1229-MONOMER - HAMAP: MF_01360 - InterPro: IPR020885
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9541; Mature: 9541
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVM CEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHH SEVSGVQISQKSGAAATGRPPGFVTVAQ HHCCCEEEECCCCCCCCCCCCCEEEECC >Mature Secondary Structure MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVM CEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHH SEVSGVQISQKSGAAATGRPPGFVTVAQ HHCCCEEEECCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA