Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474992

Identifier: 113474992

GI number: 113474992

Start: 1902054

End: 1902320

Strand: Reverse

Name: 113474992

Synonym: Tery_1229

Alternate gene names: NA

Gene position: 1902320-1902054 (Counterclockwise)

Preceding gene: 113474998

Following gene: 113474991

Centisome position: 24.55

GC content: 38.58

Gene sequence:

>267_bases
ATGTTCACTATTGATATCATTGTGAAGTACACTCCTGTACCATTTTCAATTCAACGTAAGTCCGCTGAGGATGCTGAATC
TACTTATGAACAAATCGTTGAGTCTATTCGCTCTGGAAATCCTCAAATTTTAGAATTAACTTGTGAGAAAATACCGGAGA
AAAAGATTGCTGTAGTAATGAGTGAAGTTTCTGGTGTTCAAATTTCCCAAAAATCTGGTGCTGCTGCGACTGGAAGGCCA
CCTGGTTTTGTAACTGTAGCTCAATGA

Upstream 100 bases:

>100_bases
GCAACAAAAAAGTCTGGTTATTACCCATATATATGTTCTATTACTGCCGAGAACCAAGGCGACATAAGTAATCTAATATC
TTACACTCACTAATTAAAAA

Downstream 100 bases:

>100_bases
ACCCAAAGGATAAAACCAATATTGCCACTCGTTCAGCAATTTTAGTAGAGAATATTTGTTTTAATTGGCCTAATGGCTCT
CAAGTATTACGCTCTTGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP
PGFVTVAQ

Sequences:

>Translated_88_residues
MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP
PGFVTVAQ
>Mature_88_residues
MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVMSEVSGVQISQKSGAAATGRP
PGFVTVAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0367 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1229_TRIEI (Q116J4)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721053.1
- STRING:   Q116J4
- GeneID:   4242156
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1229
- NMPDR:   fig|203124.1.peg.1365
- eggNOG:   NOG15377
- HOGENOM:   HBG284625
- OMA:   VQIYEKS
- ProtClustDB:   PRK13683
- BioCyc:   TERY203124:TERY_1229-MONOMER
- HAMAP:   MF_01360
- InterPro:   IPR020885

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9541; Mature: 9541

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVM
CEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHH
SEVSGVQISQKSGAAATGRPPGFVTVAQ
HHCCCEEEECCCCCCCCCCCCCEEEECC
>Mature Secondary Structure
MFTIDIIVKYTPVPFSIQRKSAEDAESTYEQIVESIRSGNPQILELTCEKIPEKKIAVVM
CEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHH
SEVSGVQISQKSGAAATGRPPGFVTVAQ
HHCCCEEEECCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA