Click here to switch to the map view.

The map label for this gene is yggW [C]

Identifier: 113474963

GI number: 113474963

Start: 1867440

End: 1868705

Strand: Reverse

Name: yggW [C]

Synonym: Tery_1194

Alternate gene names: 113474963

Gene position: 1868705-1867440 (Counterclockwise)

Preceding gene: 113474968

Following gene: 113474962

Centisome position: 24.11

GC content: 36.73

Gene sequence:

>1266_bases
GTGAAAAGGCCAGTCGGAAATTATTGTATTCCCAGTTCGGCTTATGTCCATATCCCTTTCTGCCGACGGCGATGCTATTA
CTGTGATTTCCCAATCTCTGTAGTAGGTGATGGTAAGAAAGGTGATAATTTTTCTCCAATTCAAGAATATGTAGAGGTAA
TTTGTCAGGAAATAAGCACTACAAAGTCTTTTGATCAACCCTTAAAAACAATTTTTTTTGGTGGTGGTACTCCTTCCCTA
TTGTCAGTGGGTCAATTAAGTCGGATTTTAGATGCCCTAGAACAAAAATTTGGAATTGTGGCCAATGCTGAAATTTCTAT
AGAAATGGACCCCGGAACTTTTGACTTAGAACAAGTGCAAGGATATAAATTCCTAGGAGTAAATCGAGTCAGCCTTGGAG
TACAAGCATTTCAAGATGATTTATTACAGGTTTGTGGGCGATTACACAATGTCTCAGATATTTACAAAGCAGTAAATACA
TTGCATCAAGCAGGAATTATTAACTTCAGTATTGATTTAATTTCAGGACTGCCCCACCAAACTTTAGAACAATGGCAAAT
TTCTTTGTTAAGTGGAATAGCTATTTCTCCAACTCATATATCCAGCTATGACCTTGTACTAGAAAAAGTTACAGCTTTTG
GACATTACTATAAACCAGGTCATGCTCCTTTACCTACAGATGAAACAGCAGCTGAAATGTATCGAATTGCACAGCAACTG
ATATCAATTTCGGGATATGAACATTATGAGATATCTAATTATGCCAAGCAAGGCTATCAGTGTAGCCACAATCGAGTTTA
CTGGGAAAATCATCCTTATTATGGCTTTGGCATGGGTGCAGCCAGCTATTTAGAAGGACAAAGATTTACCAGGCCGCGTA
CGCGGAAAAAATATTATCAATGGGTGCTATCGTTTCAAGATCATAGTTTAGAAAGTCAGGGTATTAATGCATCAAATCAG
GATTTTTTGTTAGAAACACTGATGTTAGGATTTCGCTTGGCACAAGGGATAAATGTCTTAACATTATCCCAGCAGTTTGG
TCAAAAAACTGTAGAAAAATTATTAATCTATCTACAACCCTATCAAAAGTTAGGGTGGGTAGAGTTTATCAATCAAAAAG
GTGTAGCAACCCCTTTCTCTGATAACCAGAAACTTCCGATAGAGGGACATCTGAGATTGACTGATCCTGAAGGTTTTTTG
TTTTCTAATACTGTTTTATCAACATTATTTAGTAAGATTAGTAATTCTATCAGTATGAAATGCTAA

Upstream 100 bases:

>100_bases
TTATGGTTTACCGTACTACTACCCATAATAAAATTTATAATTATTTAAAATATTTTTATATAATTATAAAATTTGTAAAT
ATTAATACAATTAATTAATA

Downstream 100 bases:

>100_bases
ATTATGGGCATTTATACTTATAAAATACTAGGTTTATACTGGACAACTTAAGTTAAATTAATTTTGTTTTACAAAAGTTA
ATTAAAAATATACTTAAGTA

Product: coproporphyrinogen III oxidase

Products: Protoporphyrinogen IX; CO2; H2O

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKRPVGNYCIPSSAYVHIPFCRRRCYYCDFPISVVGDGKKGDNFSPIQEYVEVICQEISTTKSFDQPLKTIFFGGGTPSL
LSVGQLSRILDALEQKFGIVANAEISIEMDPGTFDLEQVQGYKFLGVNRVSLGVQAFQDDLLQVCGRLHNVSDIYKAVNT
LHQAGIINFSIDLISGLPHQTLEQWQISLLSGIAISPTHISSYDLVLEKVTAFGHYYKPGHAPLPTDETAAEMYRIAQQL
ISISGYEHYEISNYAKQGYQCSHNRVYWENHPYYGFGMGAASYLEGQRFTRPRTRKKYYQWVLSFQDHSLESQGINASNQ
DFLLETLMLGFRLAQGINVLTLSQQFGQKTVEKLLIYLQPYQKLGWVEFINQKGVATPFSDNQKLPIEGHLRLTDPEGFL
FSNTVLSTLFSKISNSISMKC

Sequences:

>Translated_421_residues
MKRPVGNYCIPSSAYVHIPFCRRRCYYCDFPISVVGDGKKGDNFSPIQEYVEVICQEISTTKSFDQPLKTIFFGGGTPSL
LSVGQLSRILDALEQKFGIVANAEISIEMDPGTFDLEQVQGYKFLGVNRVSLGVQAFQDDLLQVCGRLHNVSDIYKAVNT
LHQAGIINFSIDLISGLPHQTLEQWQISLLSGIAISPTHISSYDLVLEKVTAFGHYYKPGHAPLPTDETAAEMYRIAQQL
ISISGYEHYEISNYAKQGYQCSHNRVYWENHPYYGFGMGAASYLEGQRFTRPRTRKKYYQWVLSFQDHSLESQGINASNQ
DFLLETLMLGFRLAQGINVLTLSQQFGQKTVEKLLIYLQPYQKLGWVEFINQKGVATPFSDNQKLPIEGHLRLTDPEGFL
FSNTVLSTLFSKISNSISMKC
>Mature_421_residues
MKRPVGNYCIPSSAYVHIPFCRRRCYYCDFPISVVGDGKKGDNFSPIQEYVEVICQEISTTKSFDQPLKTIFFGGGTPSL
LSVGQLSRILDALEQKFGIVANAEISIEMDPGTFDLEQVQGYKFLGVNRVSLGVQAFQDDLLQVCGRLHNVSDIYKAVNT
LHQAGIINFSIDLISGLPHQTLEQWQISLLSGIAISPTHISSYDLVLEKVTAFGHYYKPGHAPLPTDETAAEMYRIAQQL
ISISGYEHYEISNYAKQGYQCSHNRVYWENHPYYGFGMGAASYLEGQRFTRPRTRKKYYQWVLSFQDHSLESQGINASNQ
DFLLETLMLGFRLAQGINVLTLSQQFGQKTVEKLLIYLQPYQKLGWVEFINQKGVATPFSDNQKLPIEGHLRLTDPEGFL
FSNTVLSTLFSKISNSISMKC

Specific function: Unknown

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=276, Percent_Identity=31.8840579710145, Blast_Score=155, Evalue=9e-38,
Organism=Escherichia coli, GI1789325, Length=334, Percent_Identity=35.9281437125749, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI87082341, Length=383, Percent_Identity=27.6762402088773, Blast_Score=128, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR004559
- InterPro:   IPR010723
- InterPro:   IPR007197 [H]

Pfam domain/function: PF06969 HemN_C; PF04055 Radical_SAM [H]

EC number: 1.3.3.3

Molecular weight: Translated: 47521; Mature: 47521

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPVGNYCIPSSAYVHIPFCRRRCYYCDFPISVVGDGKKGDNFSPIQEYVEVICQEIST
CCCCCCCCCCCCCCEEEEEHHHCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
TKSFDQPLKTIFFGGGTPSLLSVGQLSRILDALEQKFGIVANAEISIEMDPGTFDLEQVQ
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCEEECCEEEEEECCCCCCHHHHC
GYKFLGVNRVSLGVQAFQDDLLQVCGRLHNVSDIYKAVNTLHQAGIINFSIDLISGLPHQ
CEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEHHHHCCCCHH
TLEQWQISLLSGIAISPTHISSYDLVLEKVTAFGHYYKPGHAPLPTDETAAEMYRIAQQL
HHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
ISISGYEHYEISNYAKQGYQCSHNRVYWENHPYYGFGMGAASYLEGQRFTRPRTRKKYYQ
HHHCCCCCEEHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHCCCCCCCCHHHHHHHH
WVLSFQDHSLESQGINASNQDFLLETLMLGFRLAQGINVLTLSQQFGQKTVEKLLIYLQP
HHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCC
YQKLGWVEFINQKGVATPFSDNQKLPIEGHLRLTDPEGFLFSNTVLSTLFSKISNSISMK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCC
C
C
>Mature Secondary Structure
MKRPVGNYCIPSSAYVHIPFCRRRCYYCDFPISVVGDGKKGDNFSPIQEYVEVICQEIST
CCCCCCCCCCCCCCEEEEEHHHCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHH
TKSFDQPLKTIFFGGGTPSLLSVGQLSRILDALEQKFGIVANAEISIEMDPGTFDLEQVQ
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHCEEECCEEEEEECCCCCCHHHHC
GYKFLGVNRVSLGVQAFQDDLLQVCGRLHNVSDIYKAVNTLHQAGIINFSIDLISGLPHQ
CEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEEHHHHCCCCHH
TLEQWQISLLSGIAISPTHISSYDLVLEKVTAFGHYYKPGHAPLPTDETAAEMYRIAQQL
HHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
ISISGYEHYEISNYAKQGYQCSHNRVYWENHPYYGFGMGAASYLEGQRFTRPRTRKKYYQ
HHHCCCCCEEHHHHHHCCCCCCCCEEEECCCCEEEECCCHHHHHCCCCCCCCHHHHHHHH
WVLSFQDHSLESQGINASNQDFLLETLMLGFRLAQGINVLTLSQQFGQKTVEKLLIYLQP
HHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHCC
YQKLGWVEFINQKGVATPFSDNQKLPIEGHLRLTDPEGFLFSNTVLSTLFSKISNSISMK
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHHHHHHHCCCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Coproporphyrinogen III; O2; H+

Specific reaction: coproporphyrinogen-III + O2 + 2 H+ = protoporphyrinogen-IX + 2 CO2 + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]