Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113474953

Identifier: 113474953

GI number: 113474953

Start: 1853302

End: 1854318

Strand: Reverse

Name: 113474953

Synonym: Tery_1183

Alternate gene names: NA

Gene position: 1854318-1853302 (Counterclockwise)

Preceding gene: 113474954

Following gene: 113474952

Centisome position: 23.93

GC content: 42.58

Gene sequence:

>1017_bases
ATGAAACCAGATAATTATTCCTCAGAATTAACTAACTCGGTGCGGGTGACGAAAACCCTGGAAACTCTCCCACGGGGTTG
GATAAGTTTGTCTGAAGATGAATTGATCGAAGCTTATAATTATGCGCCGAGGGTTCTCTCAAGAAAGGCTATTAAGGTTT
CAAAAATTGACTTTAGGGGATGGAGATATTCTAATTCAGAAGTTTTGCTCGGTGAAGAGCGAAATGGGAATTATTGGGTA
ATGGTTACGGAGAAGGGATGTTACTGGTTATTACCTAAAGCAAATTTCCGAATTAATTCTTTTAACAAGGATACTGTTAA
ATCTTTGTTCAAGTTCAATGGTTCTCTTTCAGAGGATGCGCGGGAGTTTATCCTGGTTAAACTGGCTAAGGTTTCTCTGA
CGCCAGGGGGAGATCAGTGGCGGTTGGAGGAGCGGGGGGTGTTAGATTTTGGTGGTAATTCTCAATTATCTCGGCTACAG
TCGGAACTGGAAGGAGTAAAGGAGGAGCGAGAAAAACTGGAATCTGAGTTGAGGTTGGCCAGGGACGAGCGCGATCGCTT
TGCTTCTCAGGTGGCAGAGTTGGCTTACGATCGCTTACAGAAGACTTTGGCCAAGTTGGAGGAAGGCGATCGCTGGCGGA
GTAATTTGACGGAGCGTTTAGAACGGTTGGAACAGGCAGGGGCGCTCCAGGAGCAACGATGTTCTAATTTGGAGGCCGAT
TATTTTCAGAGGTTGGCACAATTGAAGTCTGAGTTAAGTGAGAAGTTGGTGCAGTTGCAGTCTCAATTATCAAAACTAGA
AGAAAGTGAAATTAATAACATCTATCAGTTGCAAGAAATAACTCATAAGCAGAAAAACAATACTACTTATTTAAAAGCGG
TAGGAGCAGAAATTAACAAAATTAATAGTCAAATATTAAAACTCAAAGAGGAGTTGCAAAGACTGCTGGAAGGAGAGTTG
AGGCCAATCAAAGAGCTTGTTAGTCTGTTTGGAGGATGGCTACGAAATAGTCCATAA

Upstream 100 bases:

>100_bases
ACTACAATTTGATTAATAGGTAGTAAAATATATTGAAATTTCGTTAAATAAACTCGATAATATTTGACCAGTAAAAAAGG
CTATATATCATAAAAAAACA

Downstream 100 bases:

>100_bases
TATCTGCATCGACTACAACGATAGACCCGCAAGTAAAGTTTCACATATCTATAGAACCAGCTACTACCACAAAACGAGAG
GGAAAATGAGAAGATGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKPDNYSSELTNSVRVTKTLETLPRGWISLSEDELIEAYNYAPRVLSRKAIKVSKIDFRGWRYSNSEVLLGEERNGNYWV
MVTEKGCYWLLPKANFRINSFNKDTVKSLFKFNGSLSEDAREFILVKLAKVSLTPGGDQWRLEERGVLDFGGNSQLSRLQ
SELEGVKEEREKLESELRLARDERDRFASQVAELAYDRLQKTLAKLEEGDRWRSNLTERLERLEQAGALQEQRCSNLEAD
YFQRLAQLKSELSEKLVQLQSQLSKLEESEINNIYQLQEITHKQKNNTTYLKAVGAEINKINSQILKLKEELQRLLEGEL
RPIKELVSLFGGWLRNSP

Sequences:

>Translated_338_residues
MKPDNYSSELTNSVRVTKTLETLPRGWISLSEDELIEAYNYAPRVLSRKAIKVSKIDFRGWRYSNSEVLLGEERNGNYWV
MVTEKGCYWLLPKANFRINSFNKDTVKSLFKFNGSLSEDAREFILVKLAKVSLTPGGDQWRLEERGVLDFGGNSQLSRLQ
SELEGVKEEREKLESELRLARDERDRFASQVAELAYDRLQKTLAKLEEGDRWRSNLTERLERLEQAGALQEQRCSNLEAD
YFQRLAQLKSELSEKLVQLQSQLSKLEESEINNIYQLQEITHKQKNNTTYLKAVGAEINKINSQILKLKEELQRLLEGEL
RPIKELVSLFGGWLRNSP
>Mature_338_residues
MKPDNYSSELTNSVRVTKTLETLPRGWISLSEDELIEAYNYAPRVLSRKAIKVSKIDFRGWRYSNSEVLLGEERNGNYWV
MVTEKGCYWLLPKANFRINSFNKDTVKSLFKFNGSLSEDAREFILVKLAKVSLTPGGDQWRLEERGVLDFGGNSQLSRLQ
SELEGVKEEREKLESELRLARDERDRFASQVAELAYDRLQKTLAKLEEGDRWRSNLTERLERLEQAGALQEQRCSNLEAD
YFQRLAQLKSELSEKLVQLQSQLSKLEESEINNIYQLQEITHKQKNNTTYLKAVGAEINKINSQILKLKEELQRLLEGEL
RPIKELVSLFGGWLRNSP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39213; Mature: 39213

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDNYSSELTNSVRVTKTLETLPRGWISLSEDELIEAYNYAPRVLSRKAIKVSKIDFRG
CCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC
WRYSNSEVLLGEERNGNYWVMVTEKGCYWLLPKANFRINSFNKDTVKSLFKFNGSLSEDA
CEECCCCEEEEECCCCCEEEEEECCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCHHHH
REFILVKLAKVSLTPGGDQWRLEERGVLDFGGNSQLSRLQSELEGVKEEREKLESELRLA
HHHHHHHHHHHEECCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDERDRFASQVAELAYDRLQKTLAKLEEGDRWRSNLTERLERLEQAGALQEQRCSNLEAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHH
YFQRLAQLKSELSEKLVQLQSQLSKLEESEINNIYQLQEITHKQKNNTTYLKAVGAEINK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
INSQILKLKEELQRLLEGELRPIKELVSLFGGWLRNSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKPDNYSSELTNSVRVTKTLETLPRGWISLSEDELIEAYNYAPRVLSRKAIKVSKIDFRG
CCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEECC
WRYSNSEVLLGEERNGNYWVMVTEKGCYWLLPKANFRINSFNKDTVKSLFKFNGSLSEDA
CEECCCCEEEEECCCCCEEEEEECCCCEEEECCCCCEECCCCHHHHHHHHHHCCCCHHHH
REFILVKLAKVSLTPGGDQWRLEERGVLDFGGNSQLSRLQSELEGVKEEREKLESELRLA
HHHHHHHHHHHEECCCCCCEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDERDRFASQVAELAYDRLQKTLAKLEEGDRWRSNLTERLERLEQAGALQEQRCSNLEAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHH
YFQRLAQLKSELSEKLVQLQSQLSKLEESEINNIYQLQEITHKQKNNTTYLKAVGAEINK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
INSQILKLKEELQRLLEGELRPIKELVSLFGGWLRNSP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA